RNA id: TU138687


Basic Information

Item Value
RNA id TU138687
length 450
lncRNA type read_through
GC content 0.45
exon number 2
gene id G110733
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10421561 ~ 10470060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggtggtggtgtaatggtgtggaggatgttttcttggcacactttaggcccctttaggctcctctgacctctagcatcaacaaggcatttttgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtgttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctctaggtgagtgtgtatatgagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138671 lncRNA downstream 116314 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 861457 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 944055 9476482 ~ 9477506 (-) True G110594
TU138472 lncRNA downstream 1407235 9010140 ~ 9014326 (-) True G110576
TU138400 lncRNA downstream 1627499 8783905 ~ 8794062 (-) False G110520
TU138722 lncRNA upstream 133035 10603095 ~ 10603733 (-) True G110757
TU138921 lncRNA upstream 1201509 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1318880 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 1319992 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 1324476 11794536 ~ 11796342 (-) True G110942
AMCG00006584 mRNA downstream 35886 10375934 ~ 10385675 (-) True AMCG00006584
AMCG00006582 mRNA downstream 222875 10182177 ~ 10198686 (-) True AMCG00006582
AMCG00006578 mRNA downstream 305758 10110461 ~ 10115803 (-) True AMCG00006578
AMCG00006579 mRNA downstream 331923 10087275 ~ 10089638 (-) False AMCG00006579
AMCG00006580 mRNA downstream 336727 10069022 ~ 10084834 (-) True AMCG00006580
AMCG00006586 mRNA upstream 35991 10506051 ~ 10511361 (-) True AMCG00006586
AMCG00006587 mRNA upstream 51252 10521312 ~ 10527300 (-) True AMCG00006587
AMCG00006588 mRNA upstream 81368 10551428 ~ 10551733 (-) True AMCG00006588
AMCG00006591 mRNA upstream 169598 10639658 ~ 10653405 (-) True AMCG00006591
AMCG00006592 mRNA upstream 234013 10704073 ~ 10731630 (-) True AMCG00006592
TU138641 other downstream 314276 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 869481 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1422297 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1627499 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1697209 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1547822 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1667122 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2406232 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2406232 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2985372 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile