RNA id: TU138920



Basic Information


Item Value
RNA id TU138920
length 880
lncRNA type intronic
GC content 0.36
exon number 1
gene id G110916
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11671569 ~ 11672448 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAAACcctctttgctacacagtatttaaacccctctgtttcctagcttctttgcttccctctctcgtttacccctttcggatctccctactagcctgttcgcaAGATcgattgacctggactgtccctgtttatgctctctcgttttgcccttatcggattatctgcttcaactttAAAGCCTGCACTttgatcctttcctttggtccttgaggacgtcaCAACAGGTAAAAATGTCAGTATGTTATAATGTAGTTTTCACTAGATTCTTGAGTGCCTGTTAATATATACTTAATTTGCCTAATTTTACATCTTATATTTGAGGGTTGACTAGTCAGGGTGTCAAACTATCggtttgtttcatttaaatcacAGATGTTAGGTGGCTGTCAGTTTACCATCTATTAATCTTTGAACTGTCTAAATGATATGAATTCAAAAAAATCATAATCTgactttaatacaaaaaagctttttcaaGTTTTCCATAGCCCCACTTCTACAGTTCCCCACTCATATAGATTGTGTTGGAGCTGCCTTAGACACTAATTTGCGTTGTTTGTCTGGCCAGTGAGTTTGTATATTTAACATAATCACTTTCTAATGTTAATCCTAAAACTATAATCTAGTCGCAGCATTTTAAGAAGTGGAATCAGGCGAGATTAATGCAAAGAGTGCataagatgcatcttttcaagtgttttttgtattattattattatgtgacaTTAAGTCTTGCTTTTGTTAATGCAAGGGCAGCAGGAGAATTTTATCAGGTGGCTGGTTTTGTCTGTTGTTGGGAAAGAGAACGCTGAAATAAGATTTCTTATAAAAGAAGCTTTTCTGATCAATGCTTTAGAATCTACAGCATAAAAACCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138877 lncRNA upstream 321452 11349884 ~ 11350117 (+) True G110883
TU138835 lncRNA upstream 550834 11120390 ~ 11120735 (+) True G110849
TU138673 lncRNA upstream 1301638 10369715 ~ 10369931 (+) True G110722
TU138618 lncRNA upstream 1639723 10030426 ~ 10031846 (+) True G110681
TU138486 lncRNA upstream 2214658 9456665 ~ 9456911 (+) True G110590
TU138936 lncRNA downstream 120720 11793168 ~ 11793535 (+) True G110930
TU139023 lncRNA downstream 350362 12022810 ~ 12024549 (+) True G111008
TU139091 lncRNA downstream 514160 12186608 ~ 12187768 (+) False AMCG00006624
TU139099 lncRNA downstream 678309 12350757 ~ 12353363 (+) True G111063
TU139186 lncRNA downstream 948261 12620709 ~ 12629968 (+) True AMCG00006636
AMCG00006606 mRNA upstream 349596 11305891 ~ 11321973 (+) True AMCG00006606
AMCG00006601 mRNA upstream 552100 11116560 ~ 11119469 (+) True AMCG00006601
AMCG00006594 mRNA upstream 798012 10856045 ~ 10873557 (+) True AMCG00006594
AMCG00006593 mRNA upstream 842060 10828315 ~ 10829509 (+) True AMCG00006593
AMCG00006595 mRNA upstream 852965 10786260 ~ 10818604 (+) True AMCG00006595
AMCG00006609 mRNA downstream 62235 11734683 ~ 11735631 (+) True AMCG00006609
AMCG00006608 mRNA downstream 101538 11773986 ~ 11790179 (+) True AMCG00006608
AMCG00006614 mRNA downstream 211489 11883937 ~ 11902046 (+) True AMCG00006614
AMCG00006617 mRNA downstream 315012 11987460 ~ 12000919 (+) True AMCG00006617
AMCG00006620 mRNA downstream 340638 12013086 ~ 12014321 (+) True AMCG00006620
TU138516 other upstream 2104218 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 2947503 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 3494783 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4016375 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 4759315 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 1338736 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 9265049 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 9375888 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 9470417 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 12359665 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile