RNA id: TU138921


Basic Information

Item Value
RNA id TU138921
length 915
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G110917
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11671569 ~ 11672483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTgaacaatttcatatttttattaagtgATTTCACAGGTTTTTATGCTGTAGATTCTAAAGCATTGATCAGAAAAGCTTCTTTTATAAGAAATCTTATTTCAGCGTTCTCTTTCCCAACAACAGACAAAACCAGCCACCTGATAAAATTCTCCTGCTGCCCTTGCATTAACAAAAGCAAGACTTAAtgtcacataataataataatacaaaaaacacttgaaaagatgcatcttatGCACTCTTTGCATTAATCTCGCCTGATTCCACTTCTTAAAATGCTGCGACTAGATTATAGTTTTAGGATTAACATTAGAAAGTGATTATGTTAAATATACAAACTCACTGGCCAGACAAACAACGCAAATTAGTGTCTAAGGCAGCTCCAACACAATCTATATGAGTGGGGAACTGTAGAAGTGGGGCTATGGAAAACttgaaaaagcttttttgtattaaagtcAGATTATGATTTTTTTGAATTCATATCATTTAGACAGTTCAAAGATTAATAGATGGTAAACTGACAGCCACCTAACATCTgtgatttaaatgaaacaaaccGATAGTTTGACACCCTGACTAGTCAACCCTCAAATATAAGATGTAAAATTAGGCAAATTAAGTATATATTAACAGGCACTCAAGAATCTAGTGAAAACTACATTATAACATACTGACATTTTTACCTGTTGtgacgtcctcaaggaccaaaggaaaggatcaaAGTGCAGGCTTTaaagttgaagcagataatccgataagggcaaaacgagagagcataaacagggacagtccaggtcaatcgATCTtgcgaacaggctagtagggagatccgaaaggggtaaacgagagagggaagcaaagaagctaggaaacagaggggtttaaatactgtgtagcaaagaggGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 1067836 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 1201509 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 1366322 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 2111465 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 2194063 9476482 ~ 9477506 (-) True G110594
TU138945 lncRNA upstream 116457 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 117569 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 122053 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 227480 11899963 ~ 11902168 (-) True G110957
TU139038 lncRNA upstream 377126 12049609 ~ 12054955 (-) False AMCG00006621
AMCG00006612 mRNA downstream 51745 11612595 ~ 11619824 (-) True AMCG00006612
AMCG00006607 mRNA downstream 120008 11550314 ~ 11551561 (-) True AMCG00006607
AMCG00006602 mRNA downstream 440380 11213847 ~ 11231189 (-) True AMCG00006602
AMCG00006604 mRNA downstream 553703 11102085 ~ 11117866 (-) True AMCG00006604
AMCG00006605 mRNA downstream 618672 11052052 ~ 11052897 (-) True AMCG00006605
AMCG00006613 mRNA upstream 65736 11738219 ~ 11755480 (-) True AMCG00006613
AMCG00006611 mRNA upstream 153418 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006615 mRNA upstream 235319 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006619 mRNA upstream 292785 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006618 mRNA upstream 345386 12017869 ~ 12024549 (-) True AMCG00006618
TU138641 other downstream 1564284 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2119489 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 2672305 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 2877507 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 2947217 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 345399 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 464699 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 1203809 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 1203809 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1782949 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile