RNA id: TU138964


Basic Information

Item Value
RNA id TU138964
length 2152
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G110957
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11899963 ~ 11902168 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctAAAGAGTTTTGCATTAACAAAAATGTCTAGTTTGCAAAAAAAAGGCCAAGCTTTGTATTATTCATAAGAATAGATATTGAAACGTTTATTCTTTAAAGAACACAAGTTCAAACTTTGTGAAAAGGACTCCTTTTCAACCGCTTGAAGCAGTAGAAAGTCATCCTCCTAGGAAGTGACAGAATGCACAAGAATGGCACCAACGACAAAAACAGTTGGAATCGACACGCATGAGCAGAGCGAACCTACCTACACAGTGCACAGCTCTCTTCATGGTCTGAGACGATGAGGGCGGCTGCAATCCGCACCACTGCTTTCTCAACACAAAgggtattacacacacacacacacacacacacacacacacagggaaaggtGCCTACAGTCTTCCAGCTAGCATTGGAGTCGGTGACAGTTGTTAGTATTTGGCACCCAGGCAACACGATGCAATACCGCACTCAAAGGACAAAAAGCCAAGACAGCACGTCAACATCAGCCTGGCTGGTGACTGCACTTCTAAACTCATTGAGTTTGACGGTGCATCTGCAAACTATATAGGTGATTGGCGTTTCGAGTTTCGGGAAGATGAATGAACTAAAAGTTTAAGATGCGTCTAGTAGCTGTTccagaaaaatatgtatgtgcagaaaaaataactaaaacgtGACACTTATACTTTTTTTGGGCTAATAAAGATTATTCTAAAACCCATTATTCAATTGGCATATTGAAGcacaaaaaaagtacaatacagGTGTCTCTGCTCAGTTCTTAAGAACATTGTGCTATCTGCGGTGTATGGTGAAATGAGACGAACACACATATAGAGGCTGAATAACTTCAAATGTCCTAGTAAGTAACAAAAAGCCTTTTGTCCCGCTTGCCCTTTGTCTCAAAGCACCTGACGCTGAATCAACAGAAATCACAATGATGTCTACTGCTGTCTCTAGATTCACATGGACGGCACACAAAACACACCCCATGAAATCCAAAACGCACAGAGAAAACAGGTCCAAAGTGGaatgaaagtattcacaccggAATCCCAATGCAGCTTGGGAGAAGGTAGCGCTGATTTAAACAGTTGCTTAGCAGTGCCTATCCAGACGCCTTTCCAGTTTGATTTGCTCAATCATAATGCAACATGCATCAAATACACACTACAAATCAAAGAGTTTCTACTTGCAACAttcttaaattgtgttttttttttttttctttttaacagaactatgctcattttattttcttgtcaaaCTGTATTTGGCACACCAGTGCAGTGGTAAGGCTAGGCAACTGACAAGGCAATTTGGCAACAGACATAACAGATTACTTTTTCCTCGAGACTCCGTGCACCTATTATATCCCAGACTATCTATATAATTGATATTTTCAAACTAGTGGTGTTGTAATGGAATGGTCCACTGTTTAAACATTCAGGTTATAAATACAGGTCCCTCTACACATCTGGTGGCAGTGATTTTCCGTTTAACTTTTCATGGTCACACACTAATGCTGCCCATCGCGACATGATGAAAACTTGCTGTTTCTGCAATATTTGTGAGTACTAAAACTAGTCAGTGTAATTGGGTTAATGTGCTAAAAGTTCAGCTTATTGGATAAACTATGACTCCCCCTATTACAATTTAGAAACTACTTTTGTTTCAACTAATCCGGAGACTACATCGCTAACTAACGACATTCCTACACTTGCTCAGTAATCGGACATCCCTCCTCTCAGTGTTCAGTAATCACTCTTGTTTGACTCGGGTCTGTAAAGAGATACTTATTGCACTtctttttcaaaaggaaaaaagtctGCAGCATCACTATTTCGGGAATGCCAGGTGTTGCTGTCCGCAGTTCTCAGGTTGCCGTTTCCGTGTCCGCCTCACTGTTTCATCCTGTTCTGGGTGGGCAACTATTTGGTCCAGCCGTGAGAAAGTCCGCATGGGAGGAGCGCTTCATAGTCAAACGCGGGTTCTTTAAGGCAAGGCTCCTTCCACTGCTTTCACCGTTTCAAACAAAAcgttttctgctttttctgttgttgttttgtttttttggtataaATGGTAGTTGGAAAAAAAACTCTCTTGGCAGAAAGCAAGCACTAAAGCCTGAAGCAAGGAAAGGCATGTGAACCATTTCAG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138948 lncRNA downstream 103621 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 106462 11790052 ~ 11793501 (-) True G110940
TU138945 lncRNA downstream 110729 11788940 ~ 11789234 (-) True G110939
TU138921 lncRNA downstream 227480 11671569 ~ 11672483 (-) True G110917
TU138722 lncRNA downstream 1296230 10603095 ~ 10603733 (-) True G110757
TU139038 lncRNA upstream 147441 12049609 ~ 12054955 (-) False AMCG00006621
TU139067 lncRNA upstream 169222 12071390 ~ 12130383 (-) False AMCG00006622
TU139217 lncRNA upstream 857403 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 857403 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 1052442 12954610 ~ 12959628 (-) True G111182
AMCG00006611 mRNA downstream 60237 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006613 mRNA downstream 144483 11738219 ~ 11755480 (-) True AMCG00006613
AMCG00006612 mRNA downstream 280139 11612595 ~ 11619824 (-) True AMCG00006612
AMCG00006607 mRNA downstream 348402 11550314 ~ 11551561 (-) True AMCG00006607
AMCG00006602 mRNA downstream 668774 11213847 ~ 11231189 (-) True AMCG00006602
AMCG00006615 mRNA upstream 5634 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006619 mRNA upstream 63100 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006618 mRNA upstream 115701 12017869 ~ 12024549 (-) True AMCG00006618
AMCG00006621 mRNA upstream 147326 12049494 ~ 12069660 (-) True AMCG00006621
AMCG00006622 mRNA upstream 169235 12071403 ~ 12122799 (-) True AMCG00006622
TU138641 other downstream 1792678 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2347883 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 2900699 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 3105901 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 3175611 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 115714 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 235014 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 974124 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 974124 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1553264 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile