RNA id: TU139505


Basic Information

Item Value
RNA id TU139505
length 389
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G111389
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14003753 ~ 14004141 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggggctgcgtagccgcagaccagtcagggtgcccacgCTGACCcgtgtccactgccgaaagcgcctacaatgggcatgtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcatgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatccatggaagccccacctcacaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggaggcaaaagggggacctacacaatattaggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 1044125 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 1242917 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 1242917 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 1873370 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 1948798 12049609 ~ 12054955 (-) False AMCG00006621
TU139544 lncRNA upstream 132187 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 163990 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 178640 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 181467 14185608 ~ 14223328 (-) False G111451
TU139580 lncRNA upstream 212793 14216934 ~ 14223328 (-) True G111451
AMCG00006673 mRNA downstream 39903 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006670 mRNA downstream 277324 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006669 mRNA downstream 387564 13610273 ~ 13616189 (-) True AMCG00006669
AMCG00006662 mRNA downstream 430290 13560457 ~ 13573463 (-) True AMCG00006662
AMCG00006664 mRNA downstream 453462 13539598 ~ 13550291 (-) True AMCG00006664
AMCG00006677 mRNA upstream 97281 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006675 mRNA upstream 116297 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006676 mRNA upstream 126639 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006678 mRNA upstream 134924 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006681 mRNA upstream 248044 14252185 ~ 14270691 (-) True AMCG00006681
TU139375 other downstream 500525 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1125097 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1125097 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1863360 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 1979205 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 356087 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 721510 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 721510 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1748680 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3628750 17632891 ~ 17633445 (-) True G112059

Expression Profile