RNA id: TU139581


Basic Information

Item Value
RNA id TU139581
length 587
lncRNA type sense_over
GC content 0.37
exon number 3
gene id G111451
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14182781 ~ 14299856 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tagcagtgACAATGCAGATATAATTACATACCTTCTCAAACTGATGTACTATCAAATTTCCAATTTCTGAAAAAACCTGTACTACTGGAGTAATATGATATGAAGGGTTTTTAATCAGTTGGGTTGCTGCAGTCAAAACTTTGGGGCATTACACTGGCTCCCTCAGATGCCAAGGGACAGCCTACAGGGGGGCACAACTCCAGTCTTATAGGGCCAGGTCTGCAGCTTCTAAAGGCATATTGAAATTGattgcaaatttaaaatatgaagtgaGATCTCAAGGCCAGGAGAACACCCACTGGCCCTACATGTGCTGGAGCTGTACACTCCTGCTCTTCACCTACCTACTCcattatttacactttaaaacacaCGCAGCACACTTTTCCCGAGTTGACCTCGATGAGTAAGTTTGTCAATTTCTTCCATATTGCccaacaaaagagaaaaaaaacaatgtagttAAAATTCccaaaacaaattatgaattgCATTTCTGTATGGAGTCTGGAACTGGTGAATATCATGCAATatgaacaataacaaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139544 lncRNA downstream 45035 14136328 ~ 14137746 (-) True G111421
TU139505 lncRNA downstream 178640 14003753 ~ 14004141 (-) True G111389
TU139248 lncRNA downstream 1223153 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 1421945 12759571 ~ 12760836 (-) True G111158
TU139614 lncRNA upstream 11871 14311727 ~ 14312024 (-) True G111478
TU139617 lncRNA upstream 36845 14336701 ~ 14374310 (-) True G111481
TU139784 lncRNA upstream 412161 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 429115 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 429844 14729700 ~ 14730469 (-) False G111622
AMCG00006678 mRNA downstream 28449 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 49694 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 59023 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 79711 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006673 mRNA downstream 218931 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006687 mRNA upstream 65786 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006690 mRNA upstream 76472 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 286893 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 344751 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006698 mRNA upstream 509005 14808861 ~ 14818516 (-) True AMCG00006698
TU139375 other downstream 679553 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1304125 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1304125 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2042388 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2158233 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 60372 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 425795 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 425795 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1452965 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3333035 17632891 ~ 17633445 (-) True G112059

Expression Profile