RNA id: TU139582


Basic Information

Item Value
RNA id TU139582
length 2112
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G111451
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14182781 ~ 14299856 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCTTTCCAAACCATTTTTTATTGGataaaatgaacaggaaaatGACAACTCCAATATTCTCCAGTGATGTTTTGGACTTTATGTAGAGAATGACCATGAATCAACCAAATAGTTGTAGTTTGGCAGCTAGAAATGACAGTGGCTTCAGAACAACACAAACCCGTAGCAGCTGAGGGGATGCAGGCATGGGACTATATGGGTGCCAGGGTTCTACAGGTTATGTACATTAAATCCACAATGACAAAATCGGGCAAGTGAAGAAAAAGGTTGATTACATAATTAGAATAGTGGAATGCAGGTTTGATCAACCGTGGCTTATGCTTAAGATGGTTacatataaaaggaaaaactagGGTAGAACCAATTAATGATACAACCTGTGCTACAAAGCAAGGTAAACAAAGGAAAGATTCTCCATTTATATCAAGGTTAGTTGACAAGCTTTATAAGAAGGACCTGGGAAAAATGTACACGTTGACATATAAATGTAAGctcagtaaacaaaataaaaatcaaccagTTTACCCAAATGAAAGGAGATCTGAAACCTAGGCGCTTAGTACAAAGTTAATTATactcgatttcttagcagacacccatatccagggtgacttacaattgttacaagatgtCACATTTTTTAGATTTAACCCTTCATACAGGTAGTACCCTATGCtcgagtccagagccctaaccactacacCACACTAATCTACTACTACACACTACTGTCCTAGTTAATGTTAATGTGATGTACCCATGCCAAATGAACTAAGAACTAAGGCTGGTTTAAACAAAGGTCTTAGTGAGCAAATACTTCAATTAAAAGGGTTAGAATAGCCAAAGTGATCCAGAGCTCAAGGGAAAGAAAAACCAGAAGGCTGGCCTCTCCAAGGGCAGAGATCATTCTACTTCTAAAATCTAACATTTAACATGATTGTTACTCATGCAACTGAGCTCTAAAGACCCTGCtatttacagtatttcagtTATTGTTCAGAACACCAACTaaattggaaacaaacaaaactttgaaGGTTTTATTCTCCCCCAAACTCATTCAAAGCCAAGGCCTTCGGTATTACCTGTTCAGTGCCAGCGACCACAGACTAAACCTGGCATGCCTGCTGATCATCCCAGAATGcacacaagcattacatttaaaaaagttaaaccaatatttatttactagcactgttaaaacaatacacaaaacattCAAGTGGCAGATCTTCTTTACTGCAAGCCCTTGCAATGCAATCCAATTTATTGAACTACAGATGCTAGGTTATACAAAATTGCACCACTTTAATTAAGGCTTTTTAGTTTACATTTGGCCACCCCAAAGCAGATGTTGCATTACAAATACTGTGGCTCTGTATTGGACATATACACATGATCTTTACATCCAGGAGTTAATGCATACAAAGCAACAAGGCATTCTTAAATAAATCAGCAAAAGTTACAAACTGCAACTTGCGCCCTGTAACCAATTACACTTGATTAAAATTAGTTCCCACATTCACTACTGACATCCACAGTACTCATCCACCAAGAAACATCTCAACCCAAATATTACACATGTGAAAATCACTAACAGGCAATTTACTAACTGGTTTGAATATTTGGTTTTCCCTCAATTACAACAGATGCATGAGCAAGCAAGGGGATACAGTGAGAATCTACAGGGGCAGAAGCATGAAGAATGACtaacaaatgaaatgtttatttttattctttaaaaaaaccctcattttaaaatatatacttcctGTTGTAGACCCCCACTGTACAAACATCTATTAACATTGTTCCCtatgtaaacaaaaacatacatataagaAAAGGTTGACTTGATTTCAGTTGATTTCTTTTGAATACTAACAGATATTTGAAGGCAACATCTTAGGCTAAAGACAATAGTGACAGAAAACCATTAGATACCTTATTTTTCCAGACACAAATTACTGTTTCCACAGGTTTTCCGAAgataaaatcatattaatagCTGTTGCAATATAGCATCTTGGTAGAACAAAATCtattaattcttaaaaaaacaagaaagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139544 lncRNA downstream 47862 14136328 ~ 14137746 (-) True G111421
TU139505 lncRNA downstream 181467 14003753 ~ 14004141 (-) True G111389
TU139248 lncRNA downstream 1225980 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 1424772 12759571 ~ 12760836 (-) True G111158
TU139599 lncRNA upstream 21274 14244602 ~ 14246174 (-) True G111466
TU139585 lncRNA upstream 67139 14290467 ~ 14295549 (-) True G111452
TU139614 lncRNA upstream 88399 14311727 ~ 14312024 (-) True G111478
TU139617 lncRNA upstream 113373 14336701 ~ 14374310 (-) True G111481
TU139784 lncRNA upstream 488689 14712017 ~ 14713959 (-) True G111621
AMCG00006678 mRNA downstream 31276 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 52521 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 61850 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 82538 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006673 mRNA downstream 221758 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006681 mRNA upstream 28857 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006687 mRNA upstream 142314 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006690 mRNA upstream 153000 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 363421 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 421279 14644607 ~ 14665799 (-) True AMCG00006696
TU139375 other downstream 682380 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1306952 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1306952 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2045215 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2161060 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 136900 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 502323 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 502323 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1529493 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3409563 17632891 ~ 17633445 (-) True G112059

Expression Profile