RNA id: TU139585


Basic Information

Item Value
RNA id TU139585
length 4030
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G111452
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14290467 ~ 14295549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAAACTACTCAAGTTGTACCCTCACCTTCCAGTTGTGCAGATTCAAATCTCAAATATAATCCTTTTAGAAGGTTAAAAGGTGTAAAACTTTATAAATCAACTTACATTTGTGGCagttttggtatttttaatattttgtacagCCAAATGAATGCTGCTTCCAGATCAAAACTTGAGATCACCTCGTCCCCTTACAGGCAGGACTGATGTAGACGGGTGTCCTCCAAGCCACTGTATTACCAGAGCCAGCCCATCTAAAGACAGCACAAGAAGCGCAACTTCCCTTACACCCCCCACAGAATCTTCGGCTACTGAAAATAGCACTTTAACCCCCATAatggtttgtctttttttttttttttttagcagcatttgttgtgtttttgtggtattgaaattaaatatgaattgccCAAACTCAATCCTTACACAGCGAGGTTTCATTGAGAAGATTTCACCCATCTGCATTCTGTCCCACGTGTACTTGGAGACATTTTGATCAGTTGCATTAAGAATAATGGGGCGAAGCACACCGATTCTATATACATGTAAACGCATATACATGTGAATTGCCTGACAACTAAAGGGTGCTATACCACCAGAGGTGAAGCAGCACACATAGTTTTGCCAATATGGCAGTACCCGTGTCTCCTCTCCTACACAGCACAACCAAGCGGTGATGGGGGCCGTCCCAGTGGTACAGTTGGCCATAGCAAGCAAATGACTAAGGTGGGATGGAACAAAGACATTGGTTTTCAAAGTTGAACCAATAACAATTGAGTGGTTTCCTTGCTACAACCCTGTACAGAATCATGGTTTCAAATAACTATGAACATGCCGACAAACTAATACTGCACCCCTCAAAAACAGGCAAATAAAaccagatctgcagaaatcacGAAACCTTCAAAGGCTATTGTTCCTAACAATACTGCACAACCTCAGCCTCTGGTTACAAAATGCACAGGATAACGGCTGAAAACTACAAACCAactgaacatttcaataattgaaatgtgcgcttttgaaaagcaaacatttcacCTATATGCTTGTATAGCTATATGGTCaagaatgttacattttaaatagtctgGCAAAAATGTTGTACAATTCAAACACTGATTTGGGGTTTACAGGAAGCGATTAGATCACCTTTTCCACGGGTAATgatttgttaaaatgaaagacGTTAATGCCAATGTCACTTCATACAGGCTTTGTCAAAAAATACACCCAAAACTGGGGGTCAATAATTTCTGGATTATGACATGGTTCtgtcaatgaaaatgaaagcattaaGGCAGAAGGCAGTTCTCCCATCACTTTTAGGTACACACAAATTATGCAGATTCTCGACATTAGATTCCTGTTACAATCTAAATTACACAATCAACCCCAAACGTTTATCCCCATGACAGGGTGAAAATGAGATGTCATGAAATGAGGAAACAGATCTTCAGAATTATAAAGTGCTGTTTAACATTTCAAGATGTGTTTTGTTGATGTAACTGACTAcagttacagtatttttaaaggttttaattaaGACTTGGTaaactacattttgtattttttaaatcattactaTTTTACACATAATGCAATAGGTTTCTTGAATAAAACCAGTTTAGTTTTAACCCCTTTAACATTCTAGGAAttaacagtaaaatgtattacagcaAGAAAAACCTGCCTAGTATGCATCTTTCTATGATCCCAAGGTTTaggatatttaaaatgtccctTTCCCAAGACTTGCTGCCTTGCAATGGAACAATATTAAATGCAGTACTTTAAATATGAACACTGAAGTGGTGTACAGCTCAGTATTcacttaatacaaaaatacccAGACACATACGGAAGACTACATCGAGTTTTAAGTGCAAAATATtaccattacattttcaagaatcATTCAGTGGTAACTATCACATCCTCATTATCTTTTGACAGCTGAGAATGGAGCTCTTTGAAAATGCAAGAGCTAACGAAGCCTTTTCAGCACTTCATTAAGGACACTTTCAAGGTATGTACTGTGGAGTCTTTTGCAGATACCGAGTTTGAACAGTTACCACAGAATGACCTTAATCATAAAACACTCCACGCTATAAGACCTCAGCAATGCAGAAATGAAACAATGTGCATGGAATTGTtcagtacaatattttaaagatgtacaACACAGCTATGAACTGGACCTACAGTAGTCCCTTTAATGTACCCAATTTTTTTGCAGTCTGTAAGTACttaaaattaacaatgtaaatacaatttcttTCCCAGCCCATCATTACAAATTCCCAAAATTAAATTAGCTTACTGACAGAAGATTTTAATACTGTGGGAGTTTTTGGCAGAGGGGGGAAATTTAGGGAACTTTTAAAAGAGTGGCATTTATAAGCAACAGTCTGAAAGCAAGACAAAggaaacatacatttcacaaaagaAAGTCTTGTCAAACTACTGTTAAATATgtggtgtttaaaaaataaaataaagtattgtgTATGAACAGTCTAAAATCAGAACCCCAAAACTACTAGCAAATGTTAGTATGAAGTGTGAGCTGAAGAGTATTGAAACATGATTGTTAATTACCTAAATTGCAATGCACCTGTAGTTCAGTCTATAGCTAGTAGATTTCACAAGCTTGTATATGtccattcaataaaaacaagtgCATTAATTAGGAATATCCAGAAAACAATGAACAGTTTAGAGCCTGAGAGAATTTGGTTTAGTTTACAAAGCAATCTTGCTTGAATCAATGTAAACTATTTACTAAACATTTCCATAGCCAAACTACTAGAAGGGCATTTAATTGTGAATAAGACAAATTCAATGTATAACAGTCCTGGAGAACCTAAAACTGTCTCaactgaataatattaataggcTTTGGCATTTCTAGTCGGTCTAAGAAtgaacgaaaaaaaaaaatccagggTAGTCGTCATACAgaaactatttaatttattaaagtaaCAATTGTAGATTCACAATAACTACTTTCCAAAGTGTTTAAGGCACAaacgccccccaccccccccccccaaaaaaaagaaaacactagCTACATATTTTAAGCATTTGCAGATTTTTTTGCAAAGGCCAGATAGACGTAAAAAActcaagtctttaaaatcacGTAGTGGTTTGTAAGACACATTAGAAAATTGAACTACGTACAACTGAGACTGTAATATATGAGCAATTGAATCTGAGGTAGTTTGGGCACTAAtcctaaacaaaacaagtatgGCTTCATACATAACCTATGCtcataaagtttttttttttcctttaaacaatAGTAGGCATTCAATGATTGACTGAACACTTTTCCAGTTACAATTTACTGAACTTACTACTCTTCGTAAGTTCAGTTTCATTTTtcgtatgttttttttttttttttcagtacaacatgagggagaaaaaaaaaaaaaactgaaaaccaaaaaaaacaaacaaaaaaaggcaaaagcaaACATATTTGAAGCTAAAGCACATATACAGACAATTCCACAGGTAGCAACAAAGCGAAGACAATGCTTTGGAGCATGCAGGTGCACAAACAAATTTAACTGTACACTAAAGAGATCTTGAGATTCAATCATCATTTCCCAAAAAGGTATATAGGGggtgagaaaaaataaaaatcttacaatattaaaacataccTACCTGTACCTACCAAAACTACCACAAACCACCTGAGGCacactgtgtgtcctgcagtggCTTCTTTTGAACCTCTGCCTTTTCTCCTAGAGGATGAAAGAGGTCAGTATGTTCAATGGAGAAAACAAGAAGGGCCAATATACACACCTTCCCTAGCGGTGGCGGTACTCCCTCTCTCGGTCCCTCTCGCGGTCGCGGTCTCTGTCTCGGTCGCGGTGTCTCTCGCGCTCCCGGCTGCGTTCCCGGTAATAGTCGTCGTGGCGGTCGCGGCTGCGGGACTTATGCCGGCGGCTCTTTTCCCTGGAGCGGCTGTGGTCCCTCTCCCTGGACCTCTCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139599 lncRNA downstream 44293 14244602 ~ 14246174 (-) True G111466
TU139582 lncRNA downstream 67139 14185608 ~ 14223328 (-) False G111451
TU139580 lncRNA downstream 67139 14216934 ~ 14223328 (-) True G111451
TU139577 lncRNA downstream 75651 14168131 ~ 14214816 (-) True G111448
TU139544 lncRNA downstream 152721 14136328 ~ 14137746 (-) True G111421
TU139614 lncRNA upstream 16178 14311727 ~ 14312024 (-) True G111478
TU139617 lncRNA upstream 41152 14336701 ~ 14374310 (-) True G111481
TU139784 lncRNA upstream 416468 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 433422 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 434151 14729700 ~ 14730469 (-) False G111622
AMCG00006681 mRNA downstream 19776 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006678 mRNA downstream 136135 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 157380 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 166709 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 187397 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006687 mRNA upstream 70093 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006690 mRNA upstream 80779 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 291200 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 349058 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006698 mRNA upstream 513312 14808861 ~ 14818516 (-) True AMCG00006698
TU139375 other downstream 787239 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1411811 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1411811 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2150074 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2265919 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 64679 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 430102 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 430102 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1457272 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3337342 17632891 ~ 17633445 (-) True G112059

Expression Profile