RNA id: TU139617


Basic Information

Item Value
RNA id TU139617
length 431
lncRNA type sense_over
GC content 0.48
exon number 3
gene id G111481
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14336701 ~ 14374310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcctttaatttgtcaaccgTCTGTAGTTCTGATTGTAGCGAAACAACCTTTTGGGGTTATTGTATCTCTAATGGCTGCTGTTGATTCTGTTCATACCCAAGATCGGAAATTTAGTTGTGACTGACCAGGAGTTTGGGGAGTCTGTGTTTGAGCCGGGCTTCACCTTCGTCCTGGCTAAGTTTGATGGCGTCCTGGGGCTGGGCTACCCGTCGCTGGCTGAAGCGGGCAGCACTCCTGTGTTTGACAACATATTGTCACAGAGCCTGGTGAAGCACCCtgtgttttccttctttctcaGCAGAGGGACGGAGGACAGTGGAGAGCTAATCCTGGGTGGAGTTGATGAGTCTCTGTACAGGGGCCCCATTAACTGGGTCCCAGTGACTGAGAAAACATACTGGCAAATCAAAATAGACAAtataAAGGTG

Function

GO: NA

KEGG:

id description
ko00380 Tryptophan metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139614 lncRNA downstream 24677 14311727 ~ 14312024 (-) True G111478
TU139581 lncRNA downstream 36845 14182781 ~ 14299856 (-) False G111451
TU139585 lncRNA downstream 41152 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 90527 14244602 ~ 14246174 (-) True G111466
TU139582 lncRNA downstream 113373 14185608 ~ 14223328 (-) False G111451
TU139784 lncRNA upstream 337707 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 354661 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 355390 14729700 ~ 14730469 (-) False G111622
TU139793 lncRNA upstream 358860 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 420408 14794718 ~ 14794949 (-) True G111630
AMCG00006681 mRNA downstream 66010 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006678 mRNA downstream 182369 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 203614 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 212943 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 233631 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006690 mRNA upstream 2018 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 212439 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 270297 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006698 mRNA upstream 434551 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 531238 14905548 ~ 14927342 (-) True AMCG00006702
TU139375 other downstream 833473 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1458045 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1458045 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2196308 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2312153 12017882 ~ 12024548 (-) False AMCG00006618
TU139783 other upstream 351341 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 351341 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1378511 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3258581 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3964960 18339270 ~ 18341210 (-) False AMCG00006754

Expression Profile