RNA id: TU139789


Basic Information

Item Value
RNA id TU139789
length 560
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G111622
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14728971 ~ 14730469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACTGTTGATCTGTGGAGGCCTGTAGTGCTGTGTAAGTGACAGttttctaaaatattaattgtttcCATAGGCAGAGTGTTGTGGATGGGAAAATGGGTACCAAGANNNNNNNNNNNNNNNNCCAGACTCTTGTCTCTGTGATTCGAATGATCCTGACAGTCCAAAATGCCACAGTCTGTCTAATCACACTGTTGGGGAAGATGGCAGTTCTGTTTTGTCTTCAAAGGTCATTTNNNNNNagccCTGTGCTCCCATCTACATCGGACACATGGAAAGATTTGTTAATGCAGCGATTGGAATATATTTTGGCTTAGTGGTCATTGAcattattcttgttcttattttcattatatggATGGATTTTCAGGGGCACATCTGTTCATTGATGAAGGCACAACAATATCATGGCACACTTGCTGGGAAACAGTCTTGTCTTTTATCTGTGTGCAGGACAGTACAACCTGGCAGGATTTGAACttgaagtttttcatttttttgcaatatcttcTCTCTTTGACTATGGAGTTAAAGCTGGTCAAATCAGCCAAATGTACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139784 lncRNA downstream 15012 14712017 ~ 14713959 (-) True G111621
TU139617 lncRNA downstream 354661 14336701 ~ 14374310 (-) True G111481
TU139614 lncRNA downstream 416947 14311727 ~ 14312024 (-) True G111478
TU139585 lncRNA downstream 433422 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 482797 14244602 ~ 14246174 (-) True G111466
TU139793 lncRNA upstream 2701 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 64249 14794718 ~ 14794949 (-) True G111630
TU139901 lncRNA upstream 807007 15537476 ~ 15537836 (-) True G111728
TU139903 lncRNA upstream 827474 15557943 ~ 15558201 (-) True G111730
TU139912 lncRNA upstream 927529 15657998 ~ 15659412 (-) True G111736
AMCG00006696 mRNA downstream 63172 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006695 mRNA downstream 96200 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006690 mRNA downstream 340585 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006687 mRNA downstream 362484 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006681 mRNA downstream 458280 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006698 mRNA upstream 78392 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 175079 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006706 mRNA upstream 834130 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006707 mRNA upstream 896747 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006711 mRNA upstream 956223 15686692 ~ 15691047 (-) True AMCG00006711
TU139625 other downstream 364549 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 1225743 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1850315 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1850315 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2588578 12137182 ~ 12140393 (-) True AMCG00006625
TU139946 other upstream 1022352 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 2902422 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3608801 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 4902768 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 5505387 20235856 ~ 20236206 (-) True G112420

Expression Profile