RNA id: TU139802


Basic Information

Item Value
RNA id TU139802
length 1424
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G111635
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14809248 ~ 14811063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGGTTTAGTATAAAGTTTAATCTCCAGGAAGTCATGCTAGACAATACAGTCAGTCACAGACTAATAAATAAGCAACACTTTAAACATTGAGGTAAATTTAGTTACACAATCAAAACAGATTAACAATGTTATAGctgcattatatataatgccaatattaaaaacattccaGCAGTTTAACAATCAGAAcatttgcaataataaaaaaagttttattaaagttgatacaaaaataaatcacaaacagGAAGCTAGATTATGCATCTATATCTTTGTggatataatataaatattcctggattacatttaaatatccaATCAGTAATTAAATAGgtgttttttgtagttttgtttttagaaaacaaaagcagagcaaaacaatatatatgccTTGAAAAATGGTAATCTGAAGTAGCACAACAATAATCTTCCAAATCTAAGATATAATTCGGCATGTTCACACTAGTGTACTAGAAAAAATGTTCAACTGTTCaaaactacatttgttttgtgcacaCAAAGAAGGAGTTTTAAGCCAGTCTGACAACTTACAGAATTCATGCACATACTCGTAAATCCAAGAAAAGTCAGTATTGTTGTAAAAGCATTACATTCATTCAAATGGAGAGCACTGccccttttctttattattattattatttttttttcaaaagaaggATGGTTAGGTATGATTTAGAATTTGatctttattttaagtaaaaacatacatgcaaacctatgaaggaaaaacaaagcatttttagCCAATCTTTACATTATGCATACATTTggaactttattattaattaacaatcaAAAAAGTATAAACGGCTAAACGAAAGTGAAATTAGTTAAAACCCATTTCCATTGCAAATCTCTCTTCACTTAAAGTGTATTCTTACAGCCCACATTGACAGTTGACATTTAAGCATTGACTCTTCATGCTTGACCAGCCTCTTTCCTACGAATCTGGCAGTAAAGCGTCATTGCCAAGCTCATGCCGAAGatctgcaaaatataaaaacgaTGAAGACAGGCCTTGACTAGATCACAATTTTGACCTTGCGCTAGCTCTCTATtgcatattgatttattgatagTAAAGTGtcttttaacaataataataaaaacaaaattactatAAAACTGAATACTGAACTGTCAAGATACCATCAGGTTTTGAAAGactttatgaaaacaaaaatagcttcTTACCATGAGGATAGCAATTGCAAAGGCAATTCCCAGAACAACAGTCAAGTTCTGCTTCATAAATGCTATCACAAATGTCATACAAGGCTTTTGTACAAATTGCGAGTCCCAAATGTCTGGCACGGTGCAGAGGTATCGGTGCAGTTACAGGATGTTGGGATGTTGGAACCCCAGTCACTGTATCCATTGACTAATCCACAGCATTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139796 lncRNA upstream 14299 14794718 ~ 14794949 (+) True G111629
TU139714 lncRNA upstream 71609 14736202 ~ 14737639 (+) True G111562
TU139679 lncRNA upstream 176268 14628726 ~ 14632980 (+) True G111531
TU139569 lncRNA upstream 497224 14311752 ~ 14312024 (+) True G111443
TU139542 lncRNA upstream 671504 14136319 ~ 14137744 (+) True G111420
TU139812 lncRNA downstream 82736 14893799 ~ 14895938 (+) True G111645
TU139833 lncRNA downstream 129145 14940208 ~ 14942924 (+) True G111666
TU139872 lncRNA downstream 384231 15195294 ~ 15200003 (+) True G111699
TU139899 lncRNA downstream 665091 15476154 ~ 15476714 (+) True G111726
TU139900 lncRNA downstream 726366 15537429 ~ 15537841 (+) True G111727
AMCG00006697 mRNA upstream 28774 14771451 ~ 14780474 (+) True AMCG00006697
AMCG00006694 mRNA upstream 232976 14574681 ~ 14576272 (+) True AMCG00006694
AMCG00006693 mRNA upstream 235836 14549343 ~ 14573412 (+) True AMCG00006693
AMCG00006692 mRNA upstream 267902 14514304 ~ 14541346 (+) True AMCG00006692
AMCG00006688 mRNA upstream 343362 14450266 ~ 14465886 (+) True AMCG00006688
AMCG00006701 mRNA downstream 52751 14863814 ~ 14891825 (+) True AMCG00006701
AMCG00006700 mRNA downstream 119960 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006699 mRNA downstream 137108 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006704 mRNA downstream 167630 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006703 mRNA downstream 195249 15006312 ~ 15037025 (+) True AMCG00006703
TU139270 other upstream 1765800 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 5241897 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6085182 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6632462 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 7154054 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6126434 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6237273 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6331802 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9221050 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 9493716 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile