RNA id: TU139812


Basic Information

Item Value
RNA id TU139812
length 2140
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G111645
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14893799 ~ 14895938 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgACAATCTTGTTATCCTATGTAGGCTATGTTGTATAAAATTATCTTGCTacctgtatttttgttttatattgttttttgtttcattttgtttttctctcattttgaGTTATCTCTGTGCTTCACGtctctatgtattttttaactctAATTCCCAAGTCTTAAATGCACTCTGTGGTTAAAAGTGaaatgttgatgttgatgttggtAGCATCACAGATATCACTGATctcatgttttattgaaattcagttattcatgtttttgaacaGTGGGTGAGTGTTTGTGCTCTTGTGAACTCTTGTGAATATTGTTTTGAGTATCAGAGATCACTTTCAATAATGGCAAGGAACTGATACATGAAGGTTTAGTGATTACTTAAGCAGacgtttttaaatgatattttcTATCATTATTGTTTGAAAATCATCGATTGATCGATGATTGTTAGTGCTAAAATGAATAATACGGCTTTATTCATATCGCCCTCACCTGGAAGACAAAGACCTCACTGTGGCCGATGGAGTGGTTTACTGTTtatgaatcaaattaaaatgtgaagtaATCATTTTCTGACCTGGCATGACCCACTTTAACAATCACAGGGATGTTAAAATGCAGGGAAGTTCAATTCCTCTTTTTACGGATGTATTTCTCCGGAGCGAGGGTGAAGATGAATGCAGAAGACTTTGTTCTTTTTCCTGGTTTTGCACCTGGGAACAGCAGGAGGGTTATCCCGAACAACCAGAAACTCATCCAAGATGTTGATTTTGAAGGGGGGGAAAGTGTGCTGATTTCACATGCAGAACAgattatgaaatgaaatactCCCAATGAACAGCAGTTCGAGACCAAGAAGGTTTTttggacacatttatttagaCACACCAAAGATTAATAAGAAACATCAGAAATCTGTTAGGCCCTTGAACAATACATGGGGATTTGTTCATGATCCTATACTAAACATGAAATATGACTTGACCATATTATTCATTTTCGCACAAAGTCAAAGCTAGATTGaaggctttttctttcttttagtttgtttatttatttgaatgacaTACTATTTTGGCAATCTCTTCTGAGAGCCCAGCACCGAATATTTGAATTAGTAGTTTCTGTTGTTACTGCCTTCAAGACACCTTTTCTTCAGGTTTCTAACTTAACTGAgcagttttcaaattaattagttCATTTGGCAATACTGAAACAAGGACACTATTTTCCTCTGAATGTTTGCAGAAACATGTCTAAAAATACCTTTCAAGCTTTTGAAAAGTGTTAAATGAaaagtttgtatgttttctaGTGAGTTTCCATTCAAAGAGCACCCAAGGAAGAAAGGCTACAATACCTTCTTTAAAGTGCCTTTGGGGATTCGACATTTTAAGATGTAGCAGACATTCAAAAGAGGTACCCTGTGTTAGGTGGGGCCGAGgtgtgtttaattattcaaaacGGAAGAATATGCCATAGCTCACCCAGCTCTGCAAAGGAAACATTAATTTCCACCTGGCTGAAGCTTTTAAACAACCCATTCAGATCAATTTAACTGCCTTTTGACacagtcttttctttttaatcattaaatgtaGCAACTAAACTGTAAATCTGTGTGTCAGCAGAGTTATAAACTCTGAATCACAGTATCTGTTACAGAACACATACGTTCTTCTACGATGGCTATAAATAGtctgtaaatgtaatgcatttgttttttaattgctcaTTAGGAAACTTTATTACCTACATAGGTCAGCAGGTTTCACAAAAAGCAGTCtctgttttataaatgtgtgttgacttcattttaattgttagaCATATTCTCAATTTGGATGCAAAGCTATTTTTTTATGATCTAGAgctctttaagaaaaaaaaggtgtaTAAATATAGAGTTGTATTTatgtctaaaaatatatatgtaaagaaaTGGACTGGAGTGGAATTTTAGCTTTGAACATGAACTGCAGATTGTGGACTTCTCTCCCAGTTCTAGTCTCTGCGGTATTAGCACCAGCGCTGTTTGTAAATACAATGTGTAAATTCGTAGTTGATGTACATAGGCATATTGGCTTTTTTATTGGAGtggtaaatgtatgtaatttgtaataaacaATTTACCAAATGGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139802 lncRNA upstream 82736 14809248 ~ 14811063 (+) True G111635
TU139796 lncRNA upstream 98850 14794718 ~ 14794949 (+) True G111629
TU139714 lncRNA upstream 156160 14736202 ~ 14737639 (+) True G111562
TU139679 lncRNA upstream 260819 14628726 ~ 14632980 (+) True G111531
TU139569 lncRNA upstream 581775 14311752 ~ 14312024 (+) True G111443
TU139833 lncRNA downstream 44270 14940208 ~ 14942924 (+) True G111666
TU139872 lncRNA downstream 299356 15195294 ~ 15200003 (+) True G111699
TU139899 lncRNA downstream 580216 15476154 ~ 15476714 (+) True G111726
TU139900 lncRNA downstream 641491 15537429 ~ 15537841 (+) True G111727
TU139943 lncRNA downstream 846500 15742438 ~ 15742652 (+) True G111764
AMCG00006701 mRNA upstream 1974 14863814 ~ 14891825 (+) True AMCG00006701
AMCG00006697 mRNA upstream 113325 14771451 ~ 14780474 (+) True AMCG00006697
AMCG00006694 mRNA upstream 317527 14574681 ~ 14576272 (+) True AMCG00006694
AMCG00006693 mRNA upstream 320387 14549343 ~ 14573412 (+) True AMCG00006693
AMCG00006692 mRNA upstream 352453 14514304 ~ 14541346 (+) True AMCG00006692
AMCG00006700 mRNA downstream 35085 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006699 mRNA downstream 52233 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006704 mRNA downstream 82755 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006703 mRNA downstream 110374 15006312 ~ 15037025 (+) True AMCG00006703
AMCG00006705 mRNA downstream 170950 15066888 ~ 15067622 (+) True AMCG00006705
TU139270 other upstream 1850351 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 5326448 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6169733 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6717013 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 7238605 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6041559 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6152398 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6246927 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9136175 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 9408841 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile