RNA id: TU139833



Basic Information


Item Value
RNA id TU139833
length 975
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G111666
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14940208 ~ 14942924 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cggacatctgcgctacaagaatgcGAAGCAATATGTTTTGGAACTGCCAAGATATCCACCAATCAGCGCAGCGTGTTTGAAATACGTCACGGCGCGGCACCTTCCACCTCGCATAAGAAGCGAACAGGTGCGTCAGCCGCAGCCAGCGGAGACAACACGCACAGATTGAAAATGAGTTCGGAGAAAGTGTTGCAGAAAACTCTCCATCCGAACCAGCAACCTCCAACACAAAGTTCATCAAGACGAAAGAAGATTCAAGCGAAGAGTGACATCAGGAGTCCAACAGATAATCTGGTGTCTCCTTGTACACGCAAGCTACTGAAGAAGCCTGATAAAACTGTCAAACCCTTGCCGCAGGTGCCTAAGTTTTCAGTGGAAGATAAGGAAAATGCTGCAGTCTTTTCCAGAAAATGAAGCATAAGTTGCCTGACGGTTTTGGGCTTTGGTGACAAATGTCCATGTATTCTTTAATACAGAATCACTTGTTGcatgtttgctttgttgtaCATCAATGTGTTCCTTAAATGAATTGTGTGATTTGCATTGTTATTAAATGGTATCCCTTAAAACCAAATGCTGGTGAGCTCTGTTACAAACCTTGCAGAGCAGCTTGAAGTGGTGCTTTTAATTGGAGTATTAAAGATTTTACAAATCTGTTGGCCTTTTGTTTTAATGGGGATCTCTGACCCTGTTCAGTTGACTTCACAAGCTGTAGCAAGGGGCCTGAAGAGAGAAATTGTGGTTCTGTAGTTAATGTTGCAAATTGTGTGGAATGGGGGGCCAGGGAAGATGCTAATGCACAATGAGCTAGGCTTAAGACTGTCTTTGCTGTTGAAACTGGTGGGAAATGTTTGAATTTCTGAGTGCTGCTATTTAACTGATCATGCCTTATTTCGGTGCATTGATgcaccttttttgttttgttaagaaaaaataatccgTTACAGAAACCatattaaattcaaatacaatttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139812 lncRNA upstream 44270 14893799 ~ 14895938 (+) True G111645
TU139802 lncRNA upstream 129145 14809248 ~ 14811063 (+) True G111635
TU139796 lncRNA upstream 145259 14794718 ~ 14794949 (+) True G111629
TU139714 lncRNA upstream 202569 14736202 ~ 14737639 (+) True G111562
TU139679 lncRNA upstream 307228 14628726 ~ 14632980 (+) True G111531
TU139872 lncRNA downstream 252370 15195294 ~ 15200003 (+) True G111699
TU139899 lncRNA downstream 533230 15476154 ~ 15476714 (+) True G111726
TU139900 lncRNA downstream 594505 15537429 ~ 15537841 (+) True G111727
TU139943 lncRNA downstream 799514 15742438 ~ 15742652 (+) True G111764
TU139965 lncRNA downstream 841595 15784519 ~ 15784762 (+) True G111786
AMCG00006700 mRNA upstream 2956 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006701 mRNA upstream 48383 14863814 ~ 14891825 (+) True AMCG00006701
AMCG00006697 mRNA upstream 159734 14771451 ~ 14780474 (+) True AMCG00006697
AMCG00006694 mRNA upstream 363936 14574681 ~ 14576272 (+) True AMCG00006694
AMCG00006693 mRNA upstream 366796 14549343 ~ 14573412 (+) True AMCG00006693
AMCG00006699 mRNA downstream 5247 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006704 mRNA downstream 35769 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006703 mRNA downstream 63388 15006312 ~ 15037025 (+) True AMCG00006703
AMCG00006705 mRNA downstream 123964 15066888 ~ 15067622 (+) True AMCG00006705
AMCG00006709 mRNA downstream 731503 15674427 ~ 15683069 (+) True AMCG00006709
TU139270 other upstream 1896760 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 5372857 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6216142 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6763422 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 7285014 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 5994573 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6105412 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6199941 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9089189 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 9361855 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile