RNA id: TU139899



Basic Information


Item Value
RNA id TU139899
length 561
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G111726
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15476154 ~ 15476714 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccgataccggcacgcattcagttcaagacacctaccgaccctcacctactgctgtctcaaccacactgcaccaagctaccttcagatactcgtctctccatacatcccctccagaccactgcgctcttccggtgccagaagactaactctgcctcctctccactcctcttcctccagagccgatccttctcatccctggcccctaagtggtgaaacgaccttcccattgagtccttgacctcctatTGGTGATTATTCAAGaagcatcttttcagactctacttgtaatttagtaatttactctcctatTAGATAGCACTagtacaacgttttgtcatactcttgcctttgcattacttgcacttgtattgtttattttgatatcccctatgctccctttcccttagctcttaactttgacttaacatcttgtctgcacttatcagcttttacaatctaggatgtaagaccttatttgtaaaatgtattatgccttgaattgcactgtattattgcactttgtattgcacttatattttgtaagtcaccctagacaagggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139872 lncRNA upstream 276151 15195294 ~ 15200003 (+) True G111699
TU139833 lncRNA upstream 533230 14940208 ~ 14942924 (+) True G111666
TU139812 lncRNA upstream 580216 14893799 ~ 14895938 (+) True G111645
TU139802 lncRNA upstream 665091 14809248 ~ 14811063 (+) True G111635
TU139796 lncRNA upstream 681205 14794718 ~ 14794949 (+) True G111629
TU139900 lncRNA downstream 60715 15537429 ~ 15537841 (+) True G111727
TU139943 lncRNA downstream 265724 15742438 ~ 15742652 (+) True G111764
TU139965 lncRNA downstream 307805 15784519 ~ 15784762 (+) True G111786
TU139968 lncRNA downstream 373207 15849921 ~ 15869801 (+) True G111788
TU140129 lncRNA downstream 1238104 16714818 ~ 16722048 (+) True G111898
AMCG00006705 mRNA upstream 408532 15066888 ~ 15067622 (+) True AMCG00006705
AMCG00006703 mRNA upstream 439129 15006312 ~ 15037025 (+) True AMCG00006703
AMCG00006704 mRNA upstream 473872 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006699 mRNA upstream 512674 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006700 mRNA upstream 538902 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006709 mRNA downstream 197713 15674427 ~ 15683069 (+) True AMCG00006709
AMCG00006708 mRNA downstream 237113 15713827 ~ 15718338 (+) True AMCG00006708
AMCG00006710 mRNA downstream 243339 15720053 ~ 15726140 (+) True AMCG00006710
AMCG00006713 mRNA downstream 290397 15767111 ~ 15798662 (+) True AMCG00006713
AMCG00006721 mRNA downstream 522682 15999396 ~ 16030884 (+) True AMCG00006721
TU139270 other upstream 2432706 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 5908803 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6752088 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 7299368 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 7820960 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 5460783 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 5571622 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 5666151 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 8555399 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 8828065 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile