RNA id: TU139912


Basic Information

Item Value
RNA id TU139912
length 316
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G111736
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15657998 ~ 15659412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCCTCAGCAGGACAACACTGAACCCAGAGGCACCATGAAGACTATGATCATTCTGTTCGTCATTGCCGCGCTCTACAGCAtttcagctGTAGGTGCACTAGCATACCAACCTGTGAATTACATAGGAAGTCAAAAAGGGAAGTAAGAGTTCATCGGAGGCTGCTGTAATCAAGACAATTCCAAACTTGCTCTATTGAAATAAGAAACTGTGTAACAGTCTGTATAGTAGAAAGAGTGATGAGAgcattaactaaataaaatccCTGTCCACAAAGCTGTGTTTCTGCCTCTCATTACCAGTGCCGAGAGCATCC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139903 lncRNA downstream 99797 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 120162 15537476 ~ 15537836 (-) True G111728
TU139797 lncRNA downstream 863049 14794718 ~ 14794949 (-) True G111630
TU139793 lncRNA downstream 923827 14733170 ~ 14734171 (-) True G111626
TU139789 lncRNA downstream 927529 14728971 ~ 14730469 (-) True G111622
TU139937 lncRNA upstream 69201 15728613 ~ 15729533 (-) True G111759
TU139944 lncRNA upstream 83034 15742446 ~ 15742715 (-) True G111765
TU140035 lncRNA upstream 221718 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1203265 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1239007 16898419 ~ 16901537 (-) True G111945
AMCG00006707 mRNA downstream 26827 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006706 mRNA downstream 83243 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006702 mRNA downstream 730656 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006698 mRNA downstream 839482 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006696 mRNA downstream 992199 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006711 mRNA upstream 27280 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006712 mRNA upstream 42962 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006718 mRNA upstream 75253 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006717 mRNA upstream 75886 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006715 mRNA upstream 96870 15756282 ~ 15765276 (-) True AMCG00006715
TU139783 other downstream 904028 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 904028 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1293576 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2154770 13455432 ~ 13503228 (-) True AMCG00006663
TU139244 other downstream 2779342 12876292 ~ 12878656 (-) True AMCG00006641
TU139946 other upstream 93409 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 1973479 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2679858 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3973825 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4576444 20235856 ~ 20236206 (-) True G112420

Expression Profile