RNA id: TU139937


Basic Information

Item Value
RNA id TU139937
length 921
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G111759
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15728613 ~ 15729533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTAATCAAGGAGGTGACAATTTGAACTAAATagcattttattcaaacaaatacaatataaaagaAAAGCTACTGCATTCCCCAGTCTTCAGAGATGTGTGGCTCTGACAGTTCAGCGTCTAATGTTTTCTCTGCACTTTCACTGTACAGAATGGCACACTAACAGAGATGTTACAGATATTACAGCAGCTactgtataattaaattactttgacTTTAAGCCACACAAATCTCTCTCTATGCCGGCCTTCTGTATAGCCTCAGTAGTGGTAactttgaaatttaaaataattgaaccCCATGCACTGATATGTGCTTCAGTTAATTACATCTTGTTGGTGTGTTATTATTGAGTATGGTATTGAGTGTTATATGAAGATTACAGCTTACTTTCAAGCATTTAATAGGAAGGTCTACAGGGAGTGACACGTTGCCAAATTATAACTCAATTGCCTCAAAAGACTATTTATGTTATCAGCCTTCTGCATTAAGATTACCCTTGAAGCACATCAGGTAATGAAATGTACATTCATTGCATTTATACCATAACTGGTTATTTCAAAAGGTGTGTGCAATATGAAATCCAAACCACaattaagagaaaataataGTCAATTTACCAGCAAGAGATGTGGAATATTCTTCCATTTGTTGCACAATAGTGACCTCTGCAGGCACTAACTATCAACAGCAAGCAATAGTGCCAACAATGggttttattaacaaaacacaacctATTCTGCAATACAGTGTCTCAAAAGAAGTGTTACAGTGGGTTGCATTGTTTCAAGCATTTGCTGAAGATTTGTTCTTCCAAAACAGtattttgcacagaaaaaaaaatatataagaaagataagttattaaaatgtgtatacacTCAAAGACATTTCTATGTTCATAGTGCATGATATCTTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139912 lncRNA downstream 69201 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 170412 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 190777 15537476 ~ 15537836 (-) True G111728
TU139797 lncRNA downstream 933664 14794718 ~ 14794949 (-) True G111630
TU139793 lncRNA downstream 994442 14733170 ~ 14734171 (-) True G111626
TU139944 lncRNA upstream 12913 15742446 ~ 15742715 (-) True G111765
TU140035 lncRNA upstream 151597 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1133144 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1168886 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1168886 16898419 ~ 16901537 (-) False G111945
AMCG00006712 mRNA downstream 24006 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006711 mRNA downstream 37566 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006707 mRNA downstream 97442 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006706 mRNA downstream 153858 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006702 mRNA downstream 801271 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006718 mRNA upstream 5132 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006717 mRNA upstream 5765 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006715 mRNA upstream 26749 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006714 mRNA upstream 116698 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006716 mRNA upstream 120388 15849921 ~ 15869937 (-) True AMCG00006716
TU139783 other downstream 974643 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 974643 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1364191 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2225385 13455432 ~ 13503228 (-) True AMCG00006663
TU139244 other downstream 2849957 12876292 ~ 12878656 (-) True AMCG00006641
TU139946 other upstream 23288 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 1903358 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2609737 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3903704 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4506323 20235856 ~ 20236206 (-) True G112420

Expression Profile