RNA id: TU139946


Basic Information

Item Value
RNA id TU139946
length 313
RNA type TUCP
GC content 0.46
exon number 2
gene id G111767
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15752821 ~ 15753235 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGaatttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaacttgctgtgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaagacaactgcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139944 lncRNA downstream 10106 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 23288 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 93409 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 194620 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 214985 15537476 ~ 15537836 (-) True G111728
TU140035 lncRNA upstream 127895 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1109442 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1145184 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1145184 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 1145184 16898419 ~ 16899893 (-) False G111945
AMCG00006717 mRNA downstream 13373 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006718 mRNA downstream 17531 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006712 mRNA downstream 48214 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006711 mRNA downstream 61774 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006707 mRNA downstream 121650 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006715 mRNA upstream 3047 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006714 mRNA upstream 92996 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006716 mRNA upstream 96686 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006719 mRNA upstream 138018 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006720 mRNA upstream 146308 15899543 ~ 15928141 (-) True AMCG00006720
TU139783 other downstream 998851 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 998851 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1388399 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2249593 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 2874165 12876292 ~ 12878656 (-) False AMCG00006641
TU140351 other upstream 1879656 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2586035 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3880002 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4482621 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 5100822 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile