RNA id: TU139965



Basic Information


Item Value
RNA id TU139965
length 244
lncRNA type intronic
GC content 0.52
exon number 1
gene id G111786
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15784519 ~ 15784762 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caccgatcagccataacattttgaccacctgcctaatattgtgtaggtcccccttttgccgccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaaattgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139943 lncRNA upstream 41867 15742438 ~ 15742652 (+) True G111764
TU139900 lncRNA upstream 246678 15537429 ~ 15537841 (+) True G111727
TU139899 lncRNA upstream 307805 15476154 ~ 15476714 (+) True G111726
TU139872 lncRNA upstream 584516 15195294 ~ 15200003 (+) True G111699
TU139833 lncRNA upstream 841595 14940208 ~ 14942924 (+) True G111666
TU139968 lncRNA downstream 65159 15849921 ~ 15869801 (+) True G111788
TU140129 lncRNA downstream 930056 16714818 ~ 16722048 (+) True G111898
TU140142 lncRNA downstream 994640 16779402 ~ 16804582 (+) False G111909
TU140140 lncRNA downstream 1016083 16800845 ~ 16810470 (+) True G111909
TU140186 lncRNA downstream 1078394 16863156 ~ 16863355 (+) True G111941
AMCG00006710 mRNA upstream 58379 15720053 ~ 15726140 (+) True AMCG00006710
AMCG00006708 mRNA upstream 66181 15713827 ~ 15718338 (+) True AMCG00006708
AMCG00006709 mRNA upstream 101450 15674427 ~ 15683069 (+) True AMCG00006709
AMCG00006705 mRNA upstream 716897 15066888 ~ 15067622 (+) True AMCG00006705
AMCG00006703 mRNA upstream 747494 15006312 ~ 15037025 (+) True AMCG00006703
AMCG00006721 mRNA downstream 214634 15999396 ~ 16030884 (+) True AMCG00006721
AMCG00006724 mRNA downstream 550348 16335110 ~ 16345016 (+) True AMCG00006724
AMCG00006725 mRNA downstream 569688 16354450 ~ 16356424 (+) True AMCG00006725
AMCG00006726 mRNA downstream 593018 16377780 ~ 16425206 (+) True AMCG00006726
AMCG00006727 mRNA downstream 873533 16658295 ~ 16677242 (+) True AMCG00006727
TU139270 other upstream 2741071 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 6217168 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 7060453 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 7607733 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 8129325 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 5152735 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 5263574 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 5358103 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 8247351 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 8520017 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile