RNA id: TU139968


Basic Information

Item Value
RNA id TU139968
length 7318
lncRNA type inter_gene
GC content 0.41
exon number 9
gene id G111788
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15849921 ~ 15869801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACATTTAACAAATTTATTCATGAATATACATACACGTACAATTATCGAGTACATTAGTATTTTGTAGCATAGCATTTTGCTTTGACAACAGCTGCTATAAATGATCCAGACAGAATCCACTTTTGATACAGTCAGATAGGTATTGATCTCCTACTGAACGTGTAATGTTTCCAGGGCTTCACCATGCACAGCCACCGAGGTCAGGATGGGGATAGCAATGCACACGCAATTTTGATGTCGAGTCCCCGGGAGACTCTCATTTTTCCCTGCAAATCAGATTTCAGTCTCATGTGCTACAGCACTGGCCTCCCTGGACAGGGGAACCAGGAACACAGATTCTAGGAGAAGCCTTCCACATACTGTGGGCTTCCATCTGTTCAGCTTTTAAAAACCCTAATCCCTGGTGAACAGCTAAACAAACGGAGGCCAGActatgtaacatttattttaaattacttttaagtgCAGCACTGCTATAATTAAGCATGTCTGCATGTTAACCATCAGAGGACAGTTccacaaataaactaaaatgccCACGTTTGATAGAACACAAAAAGTGCAACATTAACCAGTTGAAGCCCAGCCAGAAACTAAATTAGTTTTGGTAAAATATTCTAACCCATTCCttccacaaaacacaaatatgtagTTTAGCATTTCCATTAGATCGATCACAAGATGCAACTAGTATAATAACCAGGTTTTAAGCAAGGATGATTTACTTAAATGGATAGCTACAGAGAAATGTTTAACAGTTAGTACAAAGCCCTAGGGTGCAATACATTGAATAAAAGTCAATTACTTCCACTAGTAAGTGCTCTTTGATTAGATTTAAAAGGGATGATCTAACACCCATTCATTCTCAGATTACTCAGAAAACAGAATAAGCGTATTACGAATGCGACAAAAATGACAAACCACTACTGAAATGTAACCATATGGTACAGGACAGCATGTATTAGGGACATCTAAAGTAACATGAGGTTCACCAAATGCCATTATAAACAATTGATCAAACACCACTAGCACTACATCTGTACTCAAAAGTTGGACATGTACAACAACACAGCCAGTGAATGTTTAGGGCTCACACGGCCCCTTGTCCTCAGACAGTGAGGGACACAGGAGTGAAGTAACAATGTCTATGTACAGCAATAAAGCTTTCCACATTCCCATCTCCAGTTCAGGAGGTCTTATGATAACCATTACTCAAGACTGCAGTGCCCATGTATAAACCAAGCGTTGTCATTTACAGCAAGAATCCCTTTACACAAAATGACCAATCAGCACTACTTCAATATGATATGGTTCCCTAAAGATTCAAAGATCCCTTTCCAATTTTAATTTACTGGAATGTATTGATTGAAATAAAAAGACATAAGAGAAACAAACATCTGAAAATactaattgtttttattcacacCCAAGTGATACAATAACCTTTGTGGTGTCTATGCAGTTCTTTAAGGGGGAGAGATCATTTCAcataaaaaacagcattaaCAAGCATATAGTATATGCACAGTACACAACTCATGTTTGATTGAGTTTCTTCCATGGCTGGGCATGGTTTCTTCCCCTTTTGACAGCCAGCCACGGATGTTTTTAACGAGTTGAGTCTAAATTACAAGTCACTGCAGCACTGCATTTCTAGAACAATGTAATGAAGGCACAGCTAGTGCAAGCACGGACTTCTCAAACCCACCGAGACTACTGGGCCGAAAGATTACTTTGGTTGGTTCTTTGTCGGGAAAGGAATAGgttggaataaacaatggtctctaaaataattcagtctttccacagctgttgtctAAGAGCAATACAACAAAAGACTTCACAAGAACCCAAACTATTTAGCAGTGAAGAAACAtgttcatgctttttttttttttcttttctcctttttcttaaGAGGGATTTACTGCATTCTAACTATTTGTACAGAGAAAAGTTCTAGTAAAATACTATGCAGAATGAGCCGAGGCTTGGAACtggcccttcatgattttgtaacaaaaaaaattaattttatttctaccaagaaaatacaaaacattataagGCTGTAAGTAactatgttttgtttaataagcTGTTACAGTGCAGTTAATCCTCAAGGCCACCAACGCAGGTTTCATTGCTGCTTGCACTCAGCTGGGGGATTTGTGTCCTTCTGTTGAAGAGAAAATTGAAACATTACTTTAAGAACGCTGTCGCAATGAtgcacattacaaaatacatccTGCCTGTCCAACAATCCTCCCAAATATAATCAGTTTCTGCCCTCCGTTATGCCCACTTTCTGACCATTAACTAAAATGAGCCATGGCTTAAAATCCAGCCACACCTCTCTAGTACCACTACCTTCTCCTAGGGGTTTTTAACCCACGTTAAATGCATCATACAATTTAGTAAATGAGCCAGCAGAGGCTCATGCTTGCTAGGTATAGGATCAACAGGGGGCCAATCACACCCCACCACTTCACGTGTGTTAGTCTAGGCTGGTAATCTATGGAAGTTTCCATTGCTCTGCCCCGTCCCACCCCAACCCCACAGATGCAGGATTTTCCCACTTCACCCAAGCCATATGGAGTACAGCTCCTGGGTGGTCTATGTGGAACAGCCTTTTCTCCCATTTAATAGTAGTGGAAGGTGCTGGCGAACAATCAGCTAACCAAGGTAAAAGCAACTACTGTCCAGTCTTTTCAAGGTGTACCTCCACCCATCCATCTTCATTCCCacttaattatcattttttcaGGTGGGGCTAGTTCTCAGATTGTGCGAGATTATTGCCAAGGTGCCAATAGGCTAAATTAGCAAGGGAACGGTGTACATGTGCAGTTTATTCCTTAAACTGATTCACGGATTCTCCTTCACTTCCCTCGATACTCTAACACTGGCACAGGTCTGCAGTACCCGGTCAGGTATGGAATGTGAAACTGTACCGTCCGAGGTGTACCCGAGCCACAGAGGAAATGCATGCAGCTACACCTGGGCCAGTTCAACCATGCTCCGCAAAAAAGTACTGGAAACTGGGCATAAGAATCAGGGGGCCTCAACCAAAACAATCTTCAAATTGTTAAGcagaaatatggaaataaaaaaatcccactcaatatttaaaaaacacacacacacacaaaaaggaggCAGGGGTATACTCAATTATGATATGGGGTGGCATTTGCACAGGTCACACAAGACTGAGTATCCTGGAAGGGATTTCAAATAGATCTCATATTAAGGGTTGGGGGGGAATTGTTTGTTATAAACTGATAATTAAAGACTGATAAACAAATTGCTCTTTCCTTCCAGGATATCCAAGAAAGATGCAAAGCACGTCCCCCTTGCTTAACTGCATGACTAATATCACGGTCGTCTAGTGGAGTCTGATTACACCCACTGCTTTAACGTCCAGGAAATTAAGTCTGTACATTTCTTAATGTGCTGCACTAAGTTTTCCTCTTCAGTCAAATCTTGATTTGTACATTAAAACCTAAGCATTCTGCCTAATGCCCATTCTAATGATTTAAACTGCTTCAACatacagaagaaatacaaaatgtttttttttttttgcaaagcgtactgcagaaaagaaacaatccaCTACATTAGTGaggaatacagtgaggggagaaatggaaggggaagaaaaacatcCAAGCACAAAGTGCATTAAACCGACAACTTGCAAGCCTTACCTACCAGGATAGGGTTATTTCTACAGACATCATTTAAACCTAGTAAGGAAAAATTTTGAAAGTAGCTGACAAAGTGCAGTGATTGGAGATgatgcattaataaaaaataaacatgaaagcaTATAGCAGGTAAGAGTCAAAAGAAACTCAGACAGGCATACAGCAATAGGACAGTAGGAATTAAAATGCCTATACCATTTTTCTGCAAATTGcaccaaaataaatgcatttgtgagTTCAGTTCACTGTAATCTAACCCAAACACTTTAATTCCAGACTTTCCAGTGCCAAGACTTTTTAAAAGGGATCCATAGTGTTCACAACACTGATTTACATGCACCCATTCCCTTACATTTAGCAAATACAATGTACAGTTAAGCATGCTTCGGTGGCAACACAGAAACCTGTTAGGCGTTAAAGCAGAGCCTGCTGGCACCTAAAGACTCACTTACAGTGCAGGACTATGAAAACTAACTAAGATAGTACTTTGTAAGACTGGTTTGAGGTTTAATTACTGCAAATTGTGTTTCACTTCAAAGGCAATCCACAAATTTaaactttacaaaatatatacatcaagtACTCCACTAAGGTTAAACTAGAGGCAGGTTACTTGACAAACATTTGGAAACCAAACAATGACAGTTTTCAGTACTTGCTAAAATACAGACTGCCacttatacattatttaaagtatatacCAGCCTTCACTGGGAACGTCCGTTAGTTATCTACAGATAGACCAAAGTACACTtctggcaaaacaaaatacatttgtatgaaGTTTTAATTTTCTGGTTAGGAGGATGTTAGGGTGGAATTTTCAAGTGTTTGAAACGTTTTGATCAGAGACCAAAACCAAAGCTAAGATTGTGAACTATTTGCATGTGCGTTCAATACGAGCCAGAATGGAAACCTCTCTGCATGGGTTAATATTGCTTGATGTAGAAATTCCCATTTAACTAAAGTTGAGCAAGTAATTCAGTGGTAAGGGTGAAATGGATATAAAACAGGTAGGAAGAAAAGGCAGTTTTGCACTACTTATTCCCAACCGATTCTTAGTCGACTCCCAATCCCCCCCCTTCCTCAACAAGCACAGCCAGGATCACTACATCCAGATCTGCCCATCACTCCAGATGCAGAAAATggttaatgaaatacatataaacagtatatattcTGTATGTTGAACGTTTGTATCTGAACACATCTGAACATGCATTATTCCAGGGCTTTAGTTTCCTAAATATTAAATGGCATTAAAAACTGGTTGCCCACCTTCGGGTCATAATCCGGATCGTTCTCCTCATCCGCTTCCTCTTCCCCTTCCTGAGTTGAAACAGAAAAAGGACTGAGCACATTGCTGAACAGTTCTTTGATTTAGCTAGGCAttggaaaatgacaaaaaccATACTAGGTGTCACTAGGGTATCACATGCAAGTCAAGTGAAACCATGAGAAAGTGATCACAATACTAACACAGGCAACACCGACATATACAACCCAACTAGTTCTGGTGAGCGGTCATGAGCCAAACCCCAATTCCCCATCGGTGCTGCGTTTTAAATGACTGTTCCCATTTCAAAccttaaaaataccaaaatggACTACAGAAGTGGAGGAAAACTAAAACACTAACATGCCTTTACATTAACCAAACATCAGGGTTGCTTCTGTAAATCAGTCATAAGTTGGGCATTGCCTGTACCCcatatttatcaaattaaatctaaGGGCTGTACCTCATCATCAgcttcctctccctcttcatcatactgaaaagaaaaaaggcaaagtCACAACAGTTCCAAGTGGGAATCGGTGCATGGAATTGGTATTACACAGTTTAAATAACGTTTAAGGAACCTACGTCGTCGTCGTCATCCTCTATCGCTTCGCCTGTGAAGTACAGCACCGCCCTGGGCACGATGCGCTCCCGGAGGAAGTGCCCGATCTCGAAGTCTGCAGACAGCACGGCCTCCGAGTCCTCATCCTGCACAAGGGTTTACCATTAATACCTGCCCACATGTGAAAGGACAGGCCAACCTTTTCTCCCCCTATATCACTGCACATGCACAGCAGACTGACCACCAGGATGTGGAATTCATCTCAGCCacagtatgtacagtacagGGGTTAGGGGAATATACCAAGTTATTTTAAACGACTGAAGACTTCTCTCCACTCTAATAGAGGAATCACGTGAAAATCTGAAGAGCCATTTTTTAACAGCAAAAGGTTATGAATTTTAACTTACCAGCTCTCCATTTTCtggaacTCAGGAGGAGTGAAGAAATTGAAGAATGAATCGTTGGGCACAGTTTTAGTCACTGTCCTGACTGTGCCCCTTCCCTTgtgcttctgcttcttcttAATGGTTTTTAACGTGACATTCTTTCCCTTTTTCCAGTCAATCTGACAGCTAAGGATGGAGGGAGAAAGGAAAATATGCCACGTCACATGACAGCTGACTCCTGTAAACTCAGGCAGCGGTGAACACCAAGACAGATTACAGTCACTCTAGAAGTTGTTAACATGCTTTAGAAGGGTGTGGAGCAGAACCATAAGAGATTCCCGCCACGATGCCGAAACAGTAGGCCGAGAGTCCCGTTCCTACCCTGTGCAGCCCATGATTTCTGGCCCGTCAAAGGAGAAGGGGTCTGCTTCATCCGGCTCTGACCTCATCTTGTAGGTTTTTGTCAATACTTCATTTGTGAAGAAGTCGTtggattcaaaataaaactcTAATGTAAAACTCTGGAAGGAACAGAGGCAGATTAAGTTTACAGACTGAAAGAACTCCTCTGTACTGTATCACTTAAACTTAATAAATGCACACTGGTGCAGTATATAGAGGTGCATGTTAAATGGGGAGAGggtgtaaaaacaaacacttaccATAGGCTGTCCCGGATCTGAAAATTTAACTTTGATGTCTTGTAAGTGCTTAAGAATTGGTTCATCATgctcCTGCAACATGTCACTGAGCAAGTCAACATTCTTAAAGACCGTCAGCCAGAACTCTGGGATTCCTTTGGgatcttctttttcttcatcttttttctcctcttctacttttgccttttctttcatttcctcCTGACTACTTACTGTCAGTTCTTCCTCCTCATCTGCCTTCCATTCACACTCTTCGTCGGTTGGCTCGTAGGCCGCTTTGATGATTTCACTTCGCTTATCAAAGAGAGGCTGATAAAGAGCAGCATACTTTCTTTCCAACTCGTGTACTTCTTCATAAAACTTGGCTTCAATCTGGGCGCACTTGACTTGGAGGTTCTTGAGGGCATTGACACGTCTCTTGACTACCTTAGGTAAACTCTCCATGTAGCCCGACGGTGATCCCACTAGCCCGTCCAGCCTCTCCTGCAAAGCAGCCAGGATCTGGGGGTTTTGCATCATCTGGACTGTTAGCTGACGAGCTTTGCTGTTGACATCTTCTccagtttcttcttcttccaccTCCTCCACATCTTCCATGTCTGCCGGATCCAGTTCGGCCTGATCTTTGTTGTCAACATCTGCCATCTTGTTTTAATCCAGGGAATTACTCGCTGCTGCTGGCGGCCGGCGGAGTGCGTCTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139965 lncRNA upstream 65159 15784519 ~ 15784762 (+) True G111786
TU139943 lncRNA upstream 107269 15742438 ~ 15742652 (+) True G111764
TU139900 lncRNA upstream 312080 15537429 ~ 15537841 (+) True G111727
TU139899 lncRNA upstream 373207 15476154 ~ 15476714 (+) True G111726
TU139872 lncRNA upstream 649918 15195294 ~ 15200003 (+) True G111699
TU140129 lncRNA downstream 845017 16714818 ~ 16722048 (+) True G111898
TU140142 lncRNA downstream 909601 16779402 ~ 16804582 (+) False G111909
TU140140 lncRNA downstream 931044 16800845 ~ 16810470 (+) True G111909
TU140186 lncRNA downstream 993355 16863156 ~ 16863355 (+) True G111941
TU140403 lncRNA downstream 2344992 18214793 ~ 18215048 (+) True G112106
AMCG00006713 mRNA upstream 51259 15767111 ~ 15798662 (+) True AMCG00006713
AMCG00006710 mRNA upstream 123781 15720053 ~ 15726140 (+) True AMCG00006710
AMCG00006708 mRNA upstream 131583 15713827 ~ 15718338 (+) True AMCG00006708
AMCG00006709 mRNA upstream 166852 15674427 ~ 15683069 (+) True AMCG00006709
AMCG00006705 mRNA upstream 782299 15066888 ~ 15067622 (+) True AMCG00006705
AMCG00006721 mRNA downstream 129595 15999396 ~ 16030884 (+) True AMCG00006721
AMCG00006724 mRNA downstream 465309 16335110 ~ 16345016 (+) True AMCG00006724
AMCG00006725 mRNA downstream 484649 16354450 ~ 16356424 (+) True AMCG00006725
AMCG00006726 mRNA downstream 507979 16377780 ~ 16425206 (+) True AMCG00006726
AMCG00006727 mRNA downstream 788494 16658295 ~ 16677242 (+) True AMCG00006727
TU139270 other upstream 2806473 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 6282570 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 7125855 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 7673135 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 8194727 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 5067696 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 5178535 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 5273064 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 8162312 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 8434978 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU132837 True 2713 lncRNA 0.39 2 NC_035907.1 8743183 ~ 8815148 (-)