RNA id: TU140140


Basic Information

Item Value
RNA id TU140140
length 4477
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G111909
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16779402 ~ 16810470 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taactttatttcatctttatttgtatatgtcaaaatacatttgttttccctccTCAAAATAGTTTCAGCGACTAGTTTCATGCTGATACAAGGTCTGCTCGGTACTACCAATAAAATTATAGCGCTGCAGCcacttcatatattttttttttctttttttgtttaacaataaataaaccaaatataaaacactattaGAAATGCGTAGCTAGGTTAAATCTGCACATGCACCCAAAACTAACACAATTTGCAAAGGGTTGAGTTAACAGTCTCACGGTCCGAGGAACCACTTAACCCATTGTTCACTAGCATTCAAACTCCAATTCTACGCTCTCAAATAAACCAATCATACCAATCAATCCACGACAGGAACAATCAGACGCACTGTAGCATGTTTAGGTGTTTAAAGTCAAGAATCCTGAGCTTGGTAGTATGAGCACGGCCTCACACCGACACAAAACCAATCACCACAAAATACAGGGACAGTCGCCCAGGTTtccaaactaaaatattttttaatagaacaCAAtgacctgtttttcttttttctttttttttttatgaagggGTATAAATTCACATTTAAGTATACAATCAATGAGGATACAATAGCTACTGCAAGctttacaatatacaatttatttgaatggtTTGAATGCTTTGAACTCTTCAGTGGTTTAACGTCACAGCAGTGTGTGCCAGTATGGAGTCACTTATTTTACATgatggtaaataataataataataataataataataataattaaaaagaaatcctGACAGTCAACCATAGCAACATTCACTATAGTAAATTTAAAAGGCCACTGAAATGCATATAATAAATGTTCCAATTTCCGGTCTTTATTTGACATAATGGTCGTCTCAAAACTTTACATGACTCTTCACATGGCATTAACAGTGCATACAGACATTGTAAAAGGACTGGTTAGAAATACCGAAGATTTTAGTGACAATATCTTGGCTAGTACTACAgttaaaaaagggggggggacAGCACTtccaaagatactgtatacAAGGTGTGAAATGTAGTGAAgcaattatattattcttaatcTCACATTTATTACTGtgaacacttaaaaaaatgacaaagaaaaaaaaaactgaaaaaacaacagcactgaATTCAACTTGCCATCTCCTTAACGAGAGAGGCTCTACTGCATCCAATGTACttactacaaaataaatgaaaatcgttaaaacacactttttctGTAGTTGTAGATTTTAATAGTAACAGGTTGGTTTGTCATCAGGAAGCATAATGCATGCCATGTGGTGGTCTGAAActcaaacaatacatatatacagcttCACTCAGTACCGGCTAAAATGAAGTGAAGAATACACAGTATAATCCAACAACtacaatacaaagaaaaggagaaaaaaaaagggggtgAACAATGAAGGCAGAAGAGGTGAAAATAATTCTACTTACAATGGACTCATTAAAGCatttgtttaagaaataaatgcatattgcaCATACAGTGAAAGCCTAAGTTTCACCAAGTCCACCTATTCAATATGGCGAgaatttttatttccttttcttaaaaattgaataaaaaaccGCAATAACTTCCATTATTCTGGTTGGGATCTTGGGtctcttcaaaaaaaaaaaaaaaaaaaaaaatgggacaGCCGAGTGAACACTGAGCTTCTAGGGAAATATCTCTGGCACATGGGTGGTTAGAAGAACATCgcacagcacacaacacttCTAAGCAGGTgtaggaacaaaaacaaacaaaaacggggaaaaaaaacaaaaaacaaaaacacataggCTGTGGCACAATAAATGTCGCTTGAATAACTTATTCTGTGACAGCTGAGAGCTCGATGCATGTGTTTATGTACAGCTAAGGCTTATTGGTTAAATATTCCGAGGCGTCCCTGGCCAAATCGCTTTCGCTCGTTCATCATGGTTTGATTTCTGTAAACTCGTTCCGTCTTGACAGCAGCTGCAGGGTTAAGTAAAATCACCTAGTAGggttttaatgaatgaaaaaggaTGGTGTGGCTGGTGGAGGGGTAGAGCAAATGTGATTGCAGATGGAAGGAGGAACCTGGTAGCTGATGTCTGTtgcaattaatattaatgtgcaATACCATTAGTTGCTGCTGCAGGACCTGGTCTACTTTGAAAGTTTGCTTATGACTCTAATCAAGGCTCCATTTTCATCCTTTAGTCTCTGGTTATCTGCTTTCAAGTCTGGTAGCATCTGAGTTCTTCCTCCATCTCAGATATCCTCCTTTCTAGAGCTCTTCTTTCCTGTTAAGAAAATTTAACtaagtaaatgaataaacaaacaaaacaaacacacaataccaCACAGCTAACAGCGTAAAGGATAATGTGAAATGTGAGCTTTATATAATGCAGCATGGAACAAAGCATGTATGTGAAGCATTTCAAGGCAAAAACTTGTCTGTGAAGATAGTGCTTATTTCATATTTCTACAGTAAGTTCCATGAATGTAGTTAAAAAAGTAACTTATAATTGTGagggattaaaataaaatgttgcaaagCCAGGAAAAATGGATTTCCCCAACCGGATAACTAagaaagaattaaacaaaacagtccaTCGAATGACATACTTGACTGTCCATTCCACAAACAATGGTAACTTGAGCAATGGGCAACGAAATACTATGACTGATGTAGGTTTGGCCAAAACATTGCAACCATCCATAGAAACAAACCCATGCTTACAATGAAACACGTCTTATAGTAAGTGATGCCAATGTCAGATAATTCAGCACGAGATGTCAAATAATCAACGTGATCAAGACATATGGTTCAAACATTGTATATGCATAAACATTTCCAATTATACATGTACTCTTGGCACAATACCTTGAATAGATGTCTAAATACAAGTGTCAACTAAATGCCAACTTGTCTAGctctaaaatgtattctgtatacGTATGCATTATGTTCTATGGCTCCTATCAAAGttattgcatacatttttaaatagcacTCTGCTAATGGAAAGTGAAGAGGAAAATAGAAGTAAATAGTGTACTTTAAGGCATTTTATGTGAAATACTGTAGTAGTCATGCTAACTACCAAAGTGTTCTCATCAGCGGCTTACAATCCATCCCCAAAAAGTCAccaattgtatatatatatttttttccttaccTTGCACCAGGCATACATAAGCATTGTCAAAAACATCTGCCAAATGCGGTATAGGTTGCCATACGGCTAGTTCAAATAAAAACTCTGACCTACCCgcaaaacatacattacaaacttgtacccaatCACCTCTTgctttataagtagtagaaagacacttctgacaataaatgcaGGCCTACTTTGCGATTATCTGGTAGGTCAAAGTCCTAAATTGGGCTAGCCtataattaatcataaaatTGGACAAAAATACTTGTAAGAAGGATGGAGTGTAAGACATTAAGCACATGCAGTCCCACTGAGAGAAGACATGTGACTAATATAACATGTTGAAAAGGCTCTCCCAAGTTGAACACAAATCTGCAAATCAGCTACGTAGAAATCcagaaaagtgaaaatgtactAAGAGAAACACATGTGAAAGAAATAGATGGTGCTTTGGTTGTGGGTTTGTCCCCACTCAAGATAAAGTTGCTAGTGAATAAACagcaagcagcagcagcagcaaggtACTGTAAAAAGTCAGGTTAGACCATACCACCCAGCTGAGAATGGGTCTTGCTGGTTACCTTCAGACATAAATCAGTTTAcatgtgttaaataaaacaaattctcaAATTCCAACACATTAAGTGAGGTCTTGCAGAGAATCACTATTCCTCGATCCTACTTTAccatcaaaatataatttcataaacTCCAGTGTTCTGAATTTACTGATTACTCCAACTTAATGGTTTCACCCTGTTAATGATTACAATATCACAGTATACTGAACAGCTCACACCCGAGACTTTAATTGTAGTTATCAAATCACTTTTTGCACTGTTCGAAGGTTAAACCGAAAGGTGTAATGCATATGGGGTAAAAGCTTCCCTTCACTGTATGCAATTGTaatgaaaaaagttaaatacaatgtgaccacaaaatacacattttgtaaaaaaaaaaaataataattgtgaaagGTATATTGAAAATGTCTCGAGAAAAACATGATTGTTTGGAAAACTCGCAATACTCTAGAATTGTTAACAGTTGTGTCATGGATGATGGCAGTTTAGTTACTAATTTTAAACAAGACATTCTTAAAATCTTTACCCTTTTCTCCATTTCCAACTGTGACCTGTCAGCAAACCGCTCCTGTCGCTGAAAGAGAAAATCAATGTTCAATGGCAccttttgtaaattaaatagtgttcaattgggggagggggcagtAGGTATCAAGTATCTTTAGCATGTTACATTAATAGAGTATCTGATGGTTTTCAAATG

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140129 lncRNA upstream 78797 16714818 ~ 16722048 (+) True G111898
TU139968 lncRNA upstream 931044 15849921 ~ 15869801 (+) True G111788
TU139965 lncRNA upstream 1016083 15784519 ~ 15784762 (+) True G111786
TU139943 lncRNA upstream 1058193 15742438 ~ 15742652 (+) True G111764
TU139900 lncRNA upstream 1263004 15537429 ~ 15537841 (+) True G111727
TU140186 lncRNA downstream 52686 16863156 ~ 16863355 (+) True G111941
TU140403 lncRNA downstream 1404323 18214793 ~ 18215048 (+) True G112106
TU140493 lncRNA downstream 1883408 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 1884689 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 1884689 18695159 ~ 18744463 (+) False G112182
AMCG00006728 mRNA upstream 102734 16695465 ~ 16698111 (+) True AMCG00006728
AMCG00006727 mRNA upstream 123603 16658295 ~ 16677242 (+) True AMCG00006727
AMCG00006726 mRNA upstream 375639 16377780 ~ 16425206 (+) True AMCG00006726
AMCG00006725 mRNA upstream 444421 16354450 ~ 16356424 (+) True AMCG00006725
AMCG00006724 mRNA upstream 455829 16335110 ~ 16345016 (+) True AMCG00006724
AMCG00006729 mRNA downstream 87811 16898281 ~ 16901493 (+) True AMCG00006729
AMCG00006730 mRNA downstream 93050 16903520 ~ 16940186 (+) True AMCG00006730
AMCG00006731 mRNA downstream 129792 16940262 ~ 16947460 (+) True AMCG00006731
AMCG00006732 mRNA downstream 144418 16954888 ~ 17022710 (+) True AMCG00006732
AMCG00006733 mRNA downstream 215852 17026322 ~ 17037135 (+) True AMCG00006733
TU139270 other upstream 3757397 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 7233494 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 8076779 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 8624059 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 9145651 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 4127027 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 4237866 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 4332395 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 7221643 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 7494309 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile