RNA id: TU140186


Basic Information

Item Value
RNA id TU140186
length 200
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G111941
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16863156 ~ 16863355 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTCACCAAGATGTGGATTGTTGCAATGTGTTTTGGATAAATGTTAGAATAACTTCAATGCTATGCTAGGGAATATAGTTACATATCACTATACATGTTTGCAAAACACTACACTCTCAGAACATGAAGTACAGAAaaccatatttttttatagtctGAAATAATTACACTATTAGAAGTAATGTAGAATAAAGTcac

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140140 lncRNA upstream 52686 16800845 ~ 16810470 (+) True G111909
TU140142 lncRNA upstream 58574 16779402 ~ 16804582 (+) False G111909
TU140129 lncRNA upstream 141108 16714818 ~ 16722048 (+) True G111898
TU139968 lncRNA upstream 993355 15849921 ~ 15869801 (+) True G111788
TU139965 lncRNA upstream 1078394 15784519 ~ 15784762 (+) True G111786
TU140403 lncRNA downstream 1351438 18214793 ~ 18215048 (+) True G112106
TU140493 lncRNA downstream 1830523 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 1831804 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 1831804 18695159 ~ 18744463 (+) False G112182
TU140528 lncRNA downstream 2037584 18900939 ~ 18903543 (+) True G112207
AMCG00006728 mRNA upstream 165045 16695465 ~ 16698111 (+) True AMCG00006728
AMCG00006727 mRNA upstream 185914 16658295 ~ 16677242 (+) True AMCG00006727
AMCG00006726 mRNA upstream 437950 16377780 ~ 16425206 (+) True AMCG00006726
AMCG00006725 mRNA upstream 506732 16354450 ~ 16356424 (+) True AMCG00006725
AMCG00006724 mRNA upstream 518140 16335110 ~ 16345016 (+) True AMCG00006724
AMCG00006729 mRNA downstream 34926 16898281 ~ 16901493 (+) True AMCG00006729
AMCG00006730 mRNA downstream 40165 16903520 ~ 16940186 (+) True AMCG00006730
AMCG00006731 mRNA downstream 76907 16940262 ~ 16947460 (+) True AMCG00006731
AMCG00006732 mRNA downstream 91533 16954888 ~ 17022710 (+) True AMCG00006732
AMCG00006733 mRNA downstream 162967 17026322 ~ 17037135 (+) True AMCG00006733
TU139270 other upstream 3819708 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 7295805 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 8139090 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 8686370 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 9207962 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 4074142 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 4184981 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 4279510 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 7168758 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 7441424 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile