RNA id: TU140194


Basic Information

Item Value
RNA id TU140194
length 1724
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G111945
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16898419 ~ 16901537 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATTTGACTTCCCCTTTTGCTGCAAATCTCACATGCGAACCTTAAATTTCATTAAAGCAAAGACAAGAGGCAAGAAATTTGGGAACCAGATTTATTGTTTGATGGAAATGTACACAGAAATTTTAACGGTAAGACTTCTGGTAGCGAGCGCGGGCTCCAGGTCCACCGAACTTCTTGGACTCGCAACGACGAGGATCGGCCACCAGCAGGGTCCTGTCAtactggataaggatgtctttGATTTCCTTCTTTGAAGCCTCATCCACATCTGAAGGAGATACGAGATTGATCAATAATGCaggaaaaaaatctgcaatATACCCTCCATATCTAGATCTCTTGAAAAGCTTCCaaaattgggaaaaaaaaaacattaaggattaaactggaaatgtgttttctatGCAATACATAAAAGATCACATTAACGATTACATTAGAAGTAGCAAATTTCACCCCGATCTTGGAGGAATGGAGACTATTTTGAGAAATGCATCACGTCAACTTTTTTGCAGACCGAAAGGCCAATAAATCAAATCATGGGCCTTCAAATACAGTCCTAGTAATTAGTGTTCCGACTCGGAGGTGCAGTCAAGACTGGGCCCCCATGCGAGCTCCCAATTTACTGACCTGAAGACCAGCTGACTAACTTGTTTCCTTTAAATCATAGAACACATAGTACACATGTATAGGCCAAGATATCATTCAAagctaatacatttttttcaaatgatatGGGAAAAGCACCCCCACTACAAAGCAAGTAAATACAACAAGTGCTCTTCTGCATATTGTGACcattaaatttgatttaatccaagcCCAAACACTTAAACAGCTGCCTAAAAACAAAACGGAGGGAGAAAAACAACTTACACTTCTGGTAGTATGCAACCAGGGATTTGGAAATGGCCTGACGGATAGCTGTGAAGAAATGAGTCAAAAAAAGCTTATGAAAAAATGATAATTCCTGATGTCACCATTTGTTAAactatataaattatacactGCGCTGTTGGTGAGCTATAAGCATCCTACTGTATAAACATACCTGGCAGCTAAACCAGCCCCCCAAACCCTTCTATTCCAGTGTCACATGTTACATTGTCATTTAATTCCATGTCAGGTTCCAAACCCAAGGCAACTGCAGTTCAGTTAACTAGTTGAGAAATTATACCAATACAGAATTAACACttccaggaaattaaaacatgtgcTGTAAAGTACTGCAGTGTGACTTACACGGTTTATACAAAGCCATCATCAATTAAAGAACAATTCACATTGAAGATCCAGGTTCTCTTTTTGGTAGGTTTCTAAAAGAAAACACTTGTTTTTGGTGTTGTGTgttaaaaacatcttaattacCATAAATCTGTGCTACGTGTCCACCACCCTTCACACGAACTCTGATGTCAACGCCAGCAAAGCGCTCCTTGCCCAAGAGCAGAACTGGCTCCAGCTTGTACTGCAGAGTCCTGGGCTCGATCATTTCCAGGGGTCTGCCATTCACCTTGATCAGGCCATTGCCCCTCTTGCAATGAGCAACAGCTGTCGCAGTTTTCTTTGCGTCCAAAGACCTGGACGGACTGCAAGGGACCTTTAGCCGGCATGTTCCTAAAAGAGAGAATATGTGTGAATTATTGCTTAGATTTACTTTAATCCGATAAAGAACAATATTTACGGAGAGCCCAATATCACACATACCGAGTTCTGCTACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140185 lncRNA downstream 35452 16862677 ~ 16862967 (-) True G111940
TU140035 lncRNA downstream 1001576 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 1155704 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 1168886 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 1239007 15657998 ~ 15659412 (-) True G111736
TU140283 lncRNA upstream 207440 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA upstream 226780 17128317 ~ 17135516 (-) True G112024
TU140448 lncRNA upstream 1497726 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 1793535 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 1793535 18695072 ~ 18745217 (-) False G112195
AMCG00006736 mRNA downstream 36642 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006735 mRNA downstream 63379 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006734 mRNA downstream 114862 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006723 mRNA downstream 836609 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006722 mRNA downstream 859031 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006737 mRNA upstream 158826 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006740 mRNA upstream 243162 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006741 mRNA upstream 425092 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006743 mRNA upstream 502089 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006746 mRNA upstream 870430 17771967 ~ 17793459 (-) True AMCG00006746
TU139946 other downstream 1145184 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2144449 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2144449 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2533997 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3395191 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 731354 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1437733 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2731700 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 3334319 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3952520 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU307400 True 2013 lncRNA 0.40 4 NC_053134.1 8426737 ~ 8429906 (-)