RNA id: TU140287


Basic Information

Item Value
RNA id TU140287
length 591
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G112024
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17128317 ~ 17135516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCCggtggggtcttctgctgttgtagcccatcCGCCTCAATGTTGTACGTGTCAACAacagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaacttagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatattactgtactgtacagatTCAATGTCATCTTATGTTATGCTTCCACAAGTATCAGGGTGACATTTCTATGATTCTAGAAGGCAGTTGGGggataaagtatatataaatgcatcagaAATGTACATTGATTTTCAATTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140191 lncRNA downstream 226780 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA downstream 226780 16898419 ~ 16901537 (-) False G111945
TU140194 lncRNA downstream 226780 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA downstream 228424 16898419 ~ 16899893 (-) False G111945
TU140185 lncRNA downstream 265350 16862677 ~ 16862967 (-) True G111940
TU140448 lncRNA upstream 1263747 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 1559556 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 1559556 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 1748112 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 1748112 18883628 ~ 18886046 (-) True G112205
AMCG00006737 mRNA downstream 55920 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006736 mRNA downstream 266540 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006735 mRNA downstream 293277 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006734 mRNA downstream 344760 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006723 mRNA downstream 1066507 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006740 mRNA upstream 9183 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006741 mRNA upstream 191113 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006743 mRNA upstream 268110 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006746 mRNA upstream 636451 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006745 mRNA upstream 809500 17945016 ~ 17954821 (-) True AMCG00006745
TU139946 other downstream 1375082 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2374347 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2374347 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2763895 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3625089 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 497375 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1203754 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2497721 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 3100340 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3718541 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile