RNA id: TU140351


Basic Information

Item Value
RNA id TU140351
length 555
RNA type TUCP
GC content 0.43
exon number 1
gene id G112059
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17632891 ~ 17633445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaatcttgggtgagaacctccttccctcattcagggcattgaaaatgggtcgtggatggtattccagcatgacaatgacgcAAAACAACCAGCCAaagcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcaagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatgtataacttttttgaaatgtgtttttctggattttgttgttgttattctgtcactcactgttaaaatacacctaccattaaaattatagactgataatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140283 lncRNA downstream 305305 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 497375 17128317 ~ 17135516 (-) True G112024
TU140191 lncRNA downstream 731354 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA downstream 731354 16898419 ~ 16901537 (-) False G111945
TU140194 lncRNA downstream 731354 16898419 ~ 16901537 (-) False G111945
TU140448 lncRNA upstream 765818 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 1061627 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 1061627 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 1250183 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 1250183 18883628 ~ 18886046 (-) True G112205
AMCG00006743 mRNA downstream 226063 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006741 mRNA downstream 305815 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006740 mRNA downstream 361155 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006737 mRNA downstream 560494 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006736 mRNA downstream 771114 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006746 mRNA upstream 138522 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006745 mRNA upstream 311571 17945016 ~ 17954821 (-) True AMCG00006745
AMCG00006747 mRNA upstream 354584 17988029 ~ 17991899 (-) True AMCG00006747
AMCG00006757 mRNA upstream 584728 18218173 ~ 18218449 (-) True AMCG00006757
AMCG00006756 mRNA upstream 585471 18218916 ~ 18337052 (-) True AMCG00006756
TU139946 other downstream 1879656 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2878921 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2878921 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 3268469 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 4129663 13455432 ~ 13503228 (-) True AMCG00006663
TU140430 other upstream 705825 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 1999792 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 2602411 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3220612 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 5770730 23404175 ~ 23407207 (-) True G113050

Expression Profile