RNA id: TU140403


Basic Information

Item Value
RNA id TU140403
length 256
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G112106
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18214793 ~ 18215048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcataaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140186 lncRNA upstream 1351438 16863156 ~ 16863355 (+) True G111941
TU140140 lncRNA upstream 1404323 16800845 ~ 16810470 (+) True G111909
TU140142 lncRNA upstream 1410211 16779402 ~ 16804582 (+) False G111909
TU140129 lncRNA upstream 1492745 16714818 ~ 16722048 (+) True G111898
TU139968 lncRNA upstream 2344992 15849921 ~ 15869801 (+) True G111788
TU140493 lncRNA downstream 478830 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 480111 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 480111 18695159 ~ 18744463 (+) False G112182
TU140528 lncRNA downstream 685891 18900939 ~ 18903543 (+) True G112207
TU140557 lncRNA downstream 880580 19095628 ~ 19100398 (+) True G112233
AMCG00006750 mRNA upstream 250022 17963401 ~ 17964771 (+) True AMCG00006750
AMCG00006751 mRNA upstream 272569 17938902 ~ 17942224 (+) True AMCG00006751
AMCG00006748 mRNA upstream 350135 17860132 ~ 17864658 (+) True AMCG00006748
AMCG00006749 mRNA upstream 359403 17817815 ~ 17855390 (+) True AMCG00006749
AMCG00006744 mRNA upstream 650155 17537677 ~ 17564638 (+) True AMCG00006744
AMCG00006753 mRNA downstream 102645 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006752 mRNA downstream 153616 18368664 ~ 18400191 (+) True AMCG00006752
AMCG00006769 mRNA downstream 1322285 19537333 ~ 19541966 (+) True AMCG00006769
AMCG00006772 mRNA downstream 1340355 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006770 mRNA downstream 1396271 19611319 ~ 19621286 (+) True AMCG00006770
TU139270 other upstream 5171345 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 8647442 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 9490727 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 10038007 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 10559599 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 2722449 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 2833288 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 2927817 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 5817065 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 6089731 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile