RNA id: TU140448


Basic Information

Item Value
RNA id TU140448
length 998
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G112140
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18399263 ~ 18408777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttctcagcagtaaaaaaacaaacatatactgtccactgataaataataatgttaatcaCCACTTAAAATACGTTCAATCTCTTCCAGTCTCTTTAAGGCCGcttcccttttcttttcaatctcCTTAATCTCTTTTGTAGATTTGGTCTTAGTCCGCTTGTCAGCCTGTGCGTTCTCCTGCTTTCTCGGCTGCTCTTTGCTCTGGCTGGTGTTTTTCGCAGGGGAGGATTTCCGTGCATTCTTGTCATTCTTGGCCTTCTCTGActctgtttttttctcctccacaACTGGGCTTTGGTTGCCATCTACTGGAGATCCCTCTTGTCCTGCAGCATTCAAAGCAGCAATCTTGCCCCTAACTATGCTCAAATGGCGTTGAATGTACTCCTCATGCGGAGCAAGGGCCAAGGTCTCGACCAGGCACTTCTCGGCTTTCACAAGGTCACGCTCCTCAAAGTAAACCACACAGAGGTTGTGCTTCCCCTGCACGTTGGTAGGGTCCATTTCAAGAATCTTTTCAAAGCATTCCTTGGCCCCTTTAGTGTCTTTTTTCTGGTTCATCAGAATGTCTCCTTTAAGGATCAGGGCTTTCGTATGTTGTGGATAATATCTTAATAACTCACTGAGGACAGGTAAAGCATCCAGTTCTCTCCCCGTCTGGGAATACAAAAGAGCTAAATTAAAAAGTGCACTCCGAAAACCTGGCTGCAGTCTGATGGCCTTTTTCATCCATTTCTCTGCCTCTTTGTTCTTATTGTCGTCCATAGCAAGCATCCCAAGGTTGAAGTACCCATTTGCATCACCTGGGTCCTCCTCGATATAAATGAGAAACCTCCGGTTAGCTTCTGGTCTGAGCCTGGCATCACCTAGAAAACGAATGAGCTGCCATTAAAGTGTCTGTCAGCATGATTTCATAATTACAGGATTAAGtgatagtttaaaaaaaaaggcatcaGGGAAGCAAAGGCACACATTCCTTAGGTTACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140283 lncRNA downstream 1071677 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 1263747 17128317 ~ 17135516 (-) True G112024
TU140191 lncRNA downstream 1497726 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA downstream 1497726 16898419 ~ 16901537 (-) False G111945
TU140194 lncRNA downstream 1497726 16898419 ~ 16901537 (-) False G111945
TU140510 lncRNA upstream 286295 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 286295 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 474851 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 474851 18883628 ~ 18886046 (-) True G112205
TU140596 lncRNA upstream 1000042 19408819 ~ 19418420 (-) True G112270
AMCG00006754 mRNA downstream 32701 18339536 ~ 18366562 (-) True AMCG00006754
AMCG00006756 mRNA downstream 62211 18218916 ~ 18337052 (-) True AMCG00006756
AMCG00006757 mRNA downstream 180814 18218173 ~ 18218449 (-) True AMCG00006757
AMCG00006747 mRNA downstream 407364 17988029 ~ 17991899 (-) True AMCG00006747
AMCG00006745 mRNA downstream 444442 17945016 ~ 17954821 (-) True AMCG00006745
AMCG00006755 mRNA upstream 7139 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006759 mRNA upstream 127272 18536049 ~ 18603662 (-) True AMCG00006759
AMCG00006758 mRNA upstream 233607 18642384 ~ 18646768 (-) True AMCG00006758
AMCG00006760 mRNA upstream 244727 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006761 mRNA upstream 287964 18696741 ~ 18712396 (-) True AMCG00006761
TU140430 other downstream 58053 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 765818 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 2646028 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 3645293 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 3645293 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 1224460 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1827079 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 2445280 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4995398 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 8091238 26500015 ~ 26500681 (-) True G113530

Expression Profile