RNA id: TU140511


Basic Information

Item Value
RNA id TU140511
length 1025
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G112195
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18695072 ~ 18745217 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaacaaaaaaaaacagtttgcaTTTTTGTCTTCATCTTAATATTTAGTCCATAAAAGACTCCCCTTACCGACAAAACGTTGCTGCATTTCtttcgtgtgtgtgtttgtgtgtggataGTTTGGCACCTGATATACTGGAAACACTAAATATTTGACAGATGAAATTTAAAGAATTGACAGGTATACACTGGTATCGCTGCACAAGGTACTTTATTTCATAACACAGCCCTTAGGGAAACTTTGATACAGATGACCATGTAAAACGTacctttgtattttttatgaaaatgcagATGTTAACATGTGGCCTACAGAACCGTAGTTTTGGGTTTTGAAATTAACTGCATTGCAGGGTTGGGGTGGGTGGGTCTCCCTTTTGTGCAGGTTCTGATAGGAATATCTTTCTCAGGGTGGCAAATAGTATGTTCTAGAAGCAGGTGTTTATATATGCCTACAGTCAAAAATACTAACATTTCTTTATGTTGAGGAATAGCATGTTAACCATGTgggttgcttttttttttttttcttttctttgctttttttcccctctccttctctcgtTGCAGCAGGATTCAAATGCAGATTGTTTGTCCCCTCCTCCTGAGCACCTTGCAAACCAAATGTTAACTGTAGAGGTGTGACGGGACGGAGAACGGGGAGAGGGGGTGGAATGCGACGTTTTTCAGTCCGCTCACTCACTAATTTATTTCGGGATTgactttttccttttgttttacaaaGAATAGTTTGagattgcaaaaaaaaaaaaaaagaaaataatggaaacaaacaaaatccataaaatgtttattttgcatcttcCTGTTATGGGAATGAATGTTTATCCATCTGTtttatggattgttttttttgtttttttatcttaacatttggaaataaaagtACTTAATGTCTGTTTATCTTGAGCAATGTTAATGGTTATTGTGATTCGATTTACATTTGAAACTTGTCCAGTAATGTGtatggtttttaaaaataaaaaaaaaattgaatatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140448 lncRNA downstream 286295 18399263 ~ 18408777 (-) True G112140
TU140283 lncRNA downstream 1367486 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 1559556 17128317 ~ 17135516 (-) True G112024
TU140194 lncRNA downstream 1793535 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA downstream 1795179 16898419 ~ 16899893 (-) False G111945
TU140523 lncRNA upstream 138411 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 138411 18883628 ~ 18886046 (-) True G112205
TU140596 lncRNA upstream 663602 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 769582 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 791988 19537205 ~ 19537793 (-) True G112288
AMCG00006760 mRNA downstream 6836 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006758 mRNA downstream 48304 18642384 ~ 18646768 (-) True AMCG00006758
AMCG00006759 mRNA downstream 91410 18536049 ~ 18603662 (-) True AMCG00006759
AMCG00006755 mRNA downstream 208908 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006754 mRNA downstream 328510 18339536 ~ 18366562 (-) True AMCG00006754
AMCG00006766 mRNA upstream 142388 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006762 mRNA upstream 169785 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006763 mRNA upstream 193933 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006764 mRNA upstream 255710 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006765 mRNA upstream 261163 19006380 ~ 19046061 (-) True AMCG00006765
TU140430 other downstream 353862 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1061627 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 2941837 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 3941102 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 888020 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1490639 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 2108840 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4658958 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7754798 26500015 ~ 26500681 (-) True G113530