RNA id: TU140557


Basic Information

Item Value
RNA id TU140557
length 4577
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G112233
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19095628 ~ 19100398 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatttacAGCAGCAGTTTCTCTTATATTTCCATCCAGTTCCATAGAGACCGTCTGAAATGCAATGAGCAAAGCAGTCATGTAAATGCATTGCTCTTAATAAAACACCCATGCTATCTGCTGGATACTGTTCTGTGttgcactgaaatattaaataacttttttccaaGTGGGGAACATGGTTGTATATTAGTAGATGAAAAGTGATATACAACACATTGGAATCGAGTACCTATGGATGCCAGTACTTTACACTGTACCTTTGATTTACctaaggaaaaatatatacaccttTAAAACAGGTTTATGTGTACTGCATAAAGCAAAAGGCAGATCTATTACACACAACATTAGTcaatactaaattatatatataaaaattgatgcattaaaatagCATTCACATGCAATTTGTACAcagtgtcttttatttttatttgtttggaccatgacatgattttattttttacattaaattcacAGCTACTTTTCAGGGTATATATTATCTTGCAAACAGAGCCATCTTGCAAATACTTAATTTTGCATAATGAAATGTATCCAACAAAAGTATCGAGACAGAGAATGTGTAAACTCTCCGATCTTTACGCTCCTGTCATTTTAAGAAGTAAACTTTGGGCGACCTGGGAACAAAACGAACAAGAAAGCTACTGAGGGGGAATGAATGGGGTCTAGGTGTATATAGACACTGCGTTACGAgtcttttaataattattatgcaCATAGGCCACCAttaattccttttcttttgctgtTAAGGTTCAGCAATGGCAGGGGGAAATGGCAGCTCAGGTGGCTGGTGTTTAAAAACGTATCTATCCTCCTGACGCCCTCTATGTGCTGATCCACACAATTGGTTTCACAGTTTCCAGCCCCACGTCCAGGCTGCCTGCAGACGAGCTACAACAGTTGGAAGTATTGTGAGATTTGACCAGGTTTAATAGGAAAGGCCTCAAAAACAACCGCATGATTCATAGTCGAGCTATAGCCAGGCACTGTTCGCCATGCTATCACATTGTGTTTGAAACAAAGGTATAACGTCTAAACGGAGCTTTATTTCAGAAGCACTTCCTGtatcacattttcattaaaaataaaataaatacttaaacaaGGGAGCTTATTGTAGAAACGTGTACTACATCCAATACATACTTTATgaaataacaaagaaacaaaaaaatcccagaTAACCAGTAATTATTGGGCCAAGGCTGTCAGGATGTCAGTCACTTTGATAGATTGTTAATTGTAATTGACAATCAGCACCGGCGGCAACATTGGTTAATGATGGACGGCCGAGCctggtgtctgtgtttgcaAATGAGATACAGCTTGAACTCCTTTTAGGCCTGACAATGTCCCCAGATGCATTAGTTGTTACTGATGTTGATCTATGGTTTTGTGACAATATTGGTTCACTTTCTTTTGCCGTTGTTCACTAAACGAACAATGCGATCTTGGCTCATGATTGTGGCTCTAAGGTTGGGAATATTTAACCAACACATGCTCAACAAGATTAGTCTGTCTGGCTGGAGGAGTCATGCCATCATCTTAAAGACTGGTTACATTTGTTGCTGTAGCTCTGGGACATCATTAGAGTTTATTTTCTCCCAAATAAGGAGTTGTGTTCAATCACCGATACATACATCCACTTATCAAATAACTTGGGTCATATATTCAAAGGTTTTGTGGATCTGAGAAACGTTTCTTGCAGCCCTTAGTGCTTTGTTAGCATCTTGCTTAAAATCGTTAGTCAGCAAAATTCAAAGGAGGAATGTCTGTCAAAACACTGCGGGTTTAAACTCACGATCTAGCTTAAACAGGCATTATAAGCAACTCTAGAAATACTTGCTCGAGTTGGAGAATGTATGGGAGTAATAGTTTGCTTTCCAGATAAAAAAGCAATCTATTTGGAAGAAGTGTCAGCACATTATTTTGCGAGGACGAATAAatccaaatgtaaaaaacatacataataaaataggGGCTACAGTGAACAACTGCAGTTTATTCACCAACTAATTATATTTGTCATAACACATCTGGTTTAATGGTGTGATGCTCTAAAGGTCACTGTCTCTTATTTGGATAAAAATACAGATGGACAATTTTTgtaaacaatgaaataataataatcattataataaaggaaaataaaggaaagtatCATCCAGGGTGACCTAAACATTTATAGtctacatatatgtattaatttacataatgtaCAACAACTCCTTATGTGCATCTTTCCCCTGGACTTTTATGATACAAACTGTAGAAAGTCATGTGACTCATTTAAACAAGTTAAACAAATTCAGTGGTACCACTGTCGTGTAATGCGAcacaatcaaaacataaaaataaaaagtttctTACTCTGCGGTTGAACTTGAATACTTTTTAATAACCCGTCTCCAAATTTGAAAAGAGACAGCTGTGATGAACAGTGTGCAAGACCTCTTCTTTCCTACACAGTTTCCATTTTGGTGTTCTCCCAACGACACAAACTTGAGATTTCCaaggaaaaagaaatacaaaaatctataaaataaactctGTAACTCCCCTTTTGCAAACATGCAGCTCTTTTGAATATATGGcccattttttCAAAGTCTTGTTAAGTCAGCTGAttcaaaaaccttttaaaacagaaaacaaaagcattgcCGGCCTACACTCGTGTCTGacataagttaaataaaacatatcccGTTGTAAAAATAAGaacttaaattaaatagtttcagtgtttatttctatttttgccttgataaaaataacatgaattaaaaaaaaggtaatatTATTAGTTGGTCCTTCTCCCTGATAGgcatttgattgattttgacGTTGTAGCTTGTTTGTCAATGCTACAATAATTAGAAAAAACCTTTTACTGTAGTCCAGGTACagattaataaattacagaatgtttctttttttaaacagatgatTGATGAGCATGTATTTGGGATAATATATACCCACATTATTATACTGTAGATCTGTCAGTTTACAGTGCATAAAGCTCAGAAAAAAGTGTccaaaataatttagaaaagcatcttcaaataagagaaacataaaaagaaaaacaagaaatgtttgAGAATGTAAAAGTTTTTTACCCCTTTGGGATGCAGTAGTATTTGTAGTAAAGCAGGAAgatatacattgaaatacaagtACAACTATATACTGTTAGATGACTTTTAGATAGATCTctgttgaatgaaaaataaaatattccttttGCAGCAAGTTTAAATATATGTCAGGATTGGAAGAGCTTATTCAGATGATGTATTAAAATAGATTACCTCATATCATATAGGACTTCATTATAGAACtattgctttgaaaaacaacTTGGCAAAAGGAGATATATTGTCAACTTTGATAGtgagttaatttaaatatgcagtGCTCTCAAAcggttttaaaaaatgaaaaaacaaagatggaAATTGAAATGATATTGTTCTATTGGTATTTgctaattcaattttaaattatactcAACCAATTAAGTCTTGAGCTGTCTAAGAACTAGTTGAAATTTGATGTACTGAAAATTGGAATTGCACAGTTACCTTGAGTACATATAAAGAGCATTGTATCGACATTTCAAATGCGCCAGACAGgtgtattatactgtacattAGATCCAAAACACCCTTCTACTGTATAATGAACATCCTCTTACACTCGTACGGTCATTCTTTATCAGTTCAATATATAGTTTACGACGACGTCCGTTTAAAAAACGTCATCGGTTTTTAGTTTTACACTTGTCTTGCGAATGGCAATCAATTATAACAACTGAACTATGaatctaaactaaactaaaaaccCAAAGCAATGTCAAATATAGTTCTTGCTGTTGAATATTTACAGTCCGAGTTTTAGTTTCCATCGTTTCGTTATGGAGACCAGTCAAAAGGGTTAAGTATGAACACAAGATGGTGTTGTCAGTCATTTCCAATAAACCATTGTAAACATCTTCACCAATGCAATGACTTAGACCAGGAGtgtattgcatttgtttccAGTTGAGTTTCTTTTAAAGTCTACTCAGATTCAGTCTCTCGAATGACACGGCTGTATCAGACACTCCTCGGTGCCCTCTCGAGTTCATGGGTCCGCCTGTTTCTGCCCTTCTTGTTTTCCTGAAGGTGTTTCCATTTGTTGGCGTGCGTTTGGGCATTGGCAGCTTTCTGTCTGCGCTGCTTGCGTTCCCTTTTCCACACCTGCTCACAAAATTCATCCATAGTGTTGAGGTTAGGATGGTTAATGAGGGACATAAAGTCTCTGTACCAGACTTTTTGGTTGGGTGGGACGATGCCGTGGCCCTCCTTTGGTTTCGCTCCTTCACCTTCTTCATCCTTGTGCAGAAGCTCGTCCAGGTGCTCGGTGTCAATAACCTCGAGGGTGACCTTGACCAAAGTCTGCATGAATCCATGCTCGACTGCATGGCAGTAGTAAATCCCTGAATCTTTCTTGTGCAGGCTGCGGATGAGGAGGCCTTGTTCTGTGCGTATGAATCTTTCCTCT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140528 lncRNA upstream 192085 18900939 ~ 18903543 (+) True G112207
TU140495 lncRNA upstream 350411 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA upstream 351165 18695159 ~ 18744463 (+) False G112182
TU140493 lncRNA upstream 401317 18693878 ~ 18694311 (+) True G112181
TU140403 lncRNA upstream 880580 18214793 ~ 18215048 (+) True G112106
TU140584 lncRNA downstream 295519 19395917 ~ 19396197 (+) True G112259
TU140602 lncRNA downstream 395136 19495534 ~ 19495765 (+) True G112275
TU140622 lncRNA downstream 526415 19626813 ~ 19628164 (+) True G112295
TU140636 lncRNA downstream 532841 19633239 ~ 19635224 (+) True G112302
TU140640 lncRNA downstream 543253 19643651 ~ 19645956 (+) True G112305
AMCG00006752 mRNA upstream 695437 18368664 ~ 18400191 (+) True AMCG00006752
AMCG00006753 mRNA upstream 756171 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006750 mRNA upstream 1130857 17963401 ~ 17964771 (+) True AMCG00006750
AMCG00006751 mRNA upstream 1153404 17938902 ~ 17942224 (+) True AMCG00006751
AMCG00006748 mRNA upstream 1230970 17860132 ~ 17864658 (+) True AMCG00006748
AMCG00006769 mRNA downstream 436935 19537333 ~ 19541966 (+) True AMCG00006769
AMCG00006772 mRNA downstream 455005 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006770 mRNA downstream 510921 19611319 ~ 19621286 (+) True AMCG00006770
AMCG00006771 mRNA downstream 535719 19636117 ~ 19642171 (+) True AMCG00006771
AMCG00006779 mRNA downstream 546732 19647130 ~ 19650694 (+) True AMCG00006779
TU139270 other upstream 6052180 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 9528277 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 10371562 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 10918842 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 11440434 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 1837099 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1947938 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 2042467 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4931715 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 5204381 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile