RNA id: TU140616


Basic Information

Item Value
RNA id TU140616
length 866
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G112289
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19541103 ~ 19541968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACTGAAACTGATGTTCAGCAAGTAGTCACGGTATAGTTTCCTTCCATCCAGCGGCTTCATGCTGTCACAAAGCAGGGTTGTGTTGGAGCACAAGGTGCGTTGCATTATGTGTAAGGCGTGAGCCATGGCATAAACGGCATTCACCACAAACATAATTTTGGATTCTGGTTCGAAATTTGAGCTGTCGATGGCCAGGTGTTTGTCACAGGCTTTCTGTTGAGCGTTTCCATTCTGTAAGACACACTGAAACTTCTGTTCCCAGAAATCAATGAACCATGGGTTTCGTTTGTTGTTTAAAGGGTTAAGATATTGGAAGTATCTGATAAACTCCTTGACCGGATGGGCAGCGAGCTCTAAAGTAATTGCTCCATTGGCTACATTCTCGTTTCCCTTGACCACACTTTCTTGAGCCCCCCAACCATCGCTGGCAATCCATGTGAAAGATGTGTTGAGTCTATTGGCAGCAGCCAGTAGCTCCCTTGTGTCGTCACTGCGCATGAAGAGCACAACTACTTTTGCATTGGGCTTTTGGAGCAGCTGACGGATTACAGCATCGTATGACTTCTTGACGTTGGATCGACCCACCTTCTCAGAGGTGGCAATACATATGTTACGAAGCCGGGCTTCTTGTTCGAAAGCTTCAATCCCCGTCTCCCCGTAGTCGCCTTCAGAGGCCACGGTGGAGACATAGGTCCAGTTGAAGAATCTCAAGATCTCCGCCATTGCCTTGGCCTGGTAAAAGTCAGGTGGAACTGTCCTGGCAAAATAGTCATATCGGGATTTATCACTCAGTTTGGCACTTGTAGAGGCATAGCTGATTTGAGGAATTTGGAACAATCGCAGTAAATTTGCAACCTAGGgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140615 lncRNA downstream 3310 19537205 ~ 19537793 (-) True G112288
TU140614 lncRNA downstream 26099 19514799 ~ 19515004 (-) True G112287
TU140596 lncRNA downstream 122683 19408819 ~ 19418420 (-) True G112270
TU140523 lncRNA downstream 655057 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 655057 18883628 ~ 18886046 (-) True G112205
TU140617 lncRNA upstream 22988 19564956 ~ 19566015 (-) True G112290
TU140619 lncRNA upstream 26549 19568517 ~ 19569672 (-) True G112292
TU140629 lncRNA upstream 81253 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA upstream 81253 19623221 ~ 19631895 (-) False AMCG00006773
TU140765 lncRNA upstream 536923 20078891 ~ 20079411 (-) True G112410
AMCG00006775 mRNA downstream 133127 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006768 mRNA downstream 204807 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006767 mRNA downstream 406376 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006765 mRNA downstream 495042 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006764 mRNA downstream 538322 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006776 mRNA upstream 27766 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006773 mRNA upstream 81187 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006774 mRNA upstream 91125 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006777 mRNA upstream 101650 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006780 mRNA upstream 137633 19679601 ~ 19781353 (-) True AMCG00006780
TU140430 other downstream 1199893 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1907658 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3787868 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4787133 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 91269 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 693888 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1312089 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3862207 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6958047 26500015 ~ 26500681 (-) True G113530

Expression Profile