RNA id: TU140622



Basic Information


Item Value
RNA id TU140622
length 1016
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G112295
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19626813 ~ 19628164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


actttaattaaatatacacattttatcaGCAAACAGAGCACTACAAAATTACATATTCaatttgcaaaaatgtaaagCCATTAAATATTACAGTTAATGCATTCAATTAACAATGTGCAATTCATAAACAGCCCTTTATGAGACATGTTTGCAATTGCAAGTCTGGATCATATTGGACCGTTCTGCGTGTACAAACAATTGGCTCTAAATAGGTAAATTGGTAAAATAAGTTTTACAACATCACTTCCCCCCCATACCAGATGGAAACAATGGCCTTAATCCCCAGCTGTGGACTAAATTAGTACACTAATAGAAACCTACCATTCTCAAGTTCTAACTGTAATGTTCGTTGCAATTGGAACTGGATATGATCATCTAGAAAGTAGCATATTATCTGTTCTCAAGTTAGACCACTAGGTGCATACCAAATATCAGCCCTGTGCAGTGAGCTGTTGAAGTGAATGGCATTGAAGGCCAATTGACTGCACTGTTTGAAGCAAATGTGGAACTGGAGAGACAGCAGGTGACAGAGCAGCTATAATACCTGGGCTAGCAGGGAATTTGAATATTGCTACAGTAAATATACGTTGGAagatattatttgcattttggcCTTCCGAGACTAAACGTTACTGGAGAGAAATCCATATTGAGTCTGAACCGTCCACATAACCCTATGTTTAATGGAACAATGCTatgaatacaaagaatataaaacaatgcTATGTCCCTAGAAAGCAATAGCTATGTTAGTAGGTATGTCATATGAAAAGTGATGTGAAAGACACAGCTAATCTGATTGTAATACACTTCCAAAGGGGCACATGatgaattacattacataagCACAAGATTTAGATTTCCCCCAAGTATACTTACAAGTATTATTACGGAGGCGCAAATCATAACGATGCAAATGGCCAAGAAGACATTCACAGGTTTCGGAGGTACATTAGGGAAGACAAAAGAACTAATAATTGTTAATAACTAGTAAGGATGTGAGGCCACCAACTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140602 lncRNA upstream 131048 19495534 ~ 19495765 (+) True G112275
TU140584 lncRNA upstream 230616 19395917 ~ 19396197 (+) True G112259
TU140557 lncRNA upstream 526415 19095628 ~ 19100398 (+) True G112233
TU140528 lncRNA upstream 723270 18900939 ~ 18903543 (+) True G112207
TU140495 lncRNA upstream 881596 18695159 ~ 18745217 (+) True G112182
TU140636 lncRNA downstream 5075 19633239 ~ 19635224 (+) True G112302
TU140640 lncRNA downstream 15487 19643651 ~ 19645956 (+) True G112305
TU140697 lncRNA downstream 312329 19940493 ~ 19940975 (+) True G112350
TU140733 lncRNA downstream 354841 19983005 ~ 19983296 (+) True G112380
TU140780 lncRNA downstream 647829 20275993 ~ 20276232 (+) True G112424
AMCG00006770 mRNA upstream 5527 19611319 ~ 19621286 (+) True AMCG00006770
AMCG00006772 mRNA upstream 58055 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006769 mRNA upstream 84847 19537333 ~ 19541966 (+) True AMCG00006769
AMCG00006752 mRNA upstream 1226622 18368664 ~ 18400191 (+) True AMCG00006752
AMCG00006753 mRNA upstream 1287356 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006771 mRNA downstream 7953 19636117 ~ 19642171 (+) True AMCG00006771
AMCG00006779 mRNA downstream 18966 19647130 ~ 19650694 (+) True AMCG00006779
AMCG00006778 mRNA downstream 69267 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006783 mRNA downstream 243842 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006781 mRNA downstream 256558 19884722 ~ 19933196 (+) True AMCG00006781
TU139270 other upstream 6583365 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10059462 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 10902747 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11450027 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 11971619 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 1309333 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1420172 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1514701 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4403949 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4676615 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile