RNA id: TU140640


Basic Information

Item Value
RNA id TU140640
length 1908
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G112305
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19643651 ~ 19645956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGCCAGTTTCTCTTCTATGGAGCAGTTGTGCCCTTGGGACTGGTACAGCTCCAGGCAGACCGAAGAGAGGCTCCCTGGACTCTGCAGAACGTGCTGCCTCCTTGCAGGCAGAGGGGTGCCAGACGGTAACAAAACTGTATAGATGTCCGCCCCCGAATCATCAGCCtcctggaagagagagagaatgagggagAATGTTTTATTAGGTTGAAAATCCAAACAAATGTTACACTGCTGAACATCACTTTTCCATCTCTCCTCATTACCTTGACAAGAATATCCTTGGCACAACAATCCACCGTTATAGAATCCTCCTCCAGGGCGTCCCTCCCCAGCAGCAACCCGGCCTCAATGGCAGCACCAATTGGAATGACTTCATCGGGGGGGATGGAATTCAGAAGCTCCACATCTGGAAACAGATCCCGAATCATCTGCTGGAGCTTGGGGATCTTTGCAGAGCCCCCACACAGCACCACCTAGCAACAGAGCAACACGCTAGTAAAACCTCAGACTGCTTCATTTGGCCTGCCTaccatttttaaatcagttctTTAAATAgatgtgcatttattatttaatggtgATATGCCTTCGTTTTTCCTTCTAAATAAGACATCTACCAAGTTGACAAGCTATTCTATGGAAACACTGTCTTCCAAGAACATTTCAGTGCAAGACAAGTTTAAGACTCAAAAATCcttataaattatgtatttcaatgttttacCTTACTGACGTCATTTGTAGAAAGACCGACTTGGTCCAAGAGATTTTTGATTGGCTGTATACTCTTATTAAAAAGAGTAGAGCATACAAGCTCAAATCGagccctAGACATTGCAGTCAAAGTCCATTCCATCAAAGAGAGAGTCGACAAAACAGTTTGAGCTCCCCAGAGTAGAGAGGGTGTGCTTTGCAACCTCTGCGCTGTTCATCAGCTTCAGCATAGCTCTAGGATTGCCCGTGATGTCATGTTTATAGGTTTTTAAACTCAGATGCTAAATATTGGGCGAGAGCCTCTGAAAAACTCTCTCCACCAATGCTGCCGTCGGACTGTGTGGCCAGGACTCGATACAGTCCACTGTTCACCTCCATCACCGTCACGGACAGGGACGTCCCTCCAAGCTTATAAACAAGCACGTGGCTTTTCCAGTTGGAGAGTCTTGGCCAATCCCATAAGCCAACAGTGCCGCTGAAGGTTCATGAATTAATCTCAACACGTTGAAACCAGACACCTCCGCTGCTTGTCTAAGAAACAAACCAGAGACAGAGGGCTTGACTTGAACATTTGTAATCTATTGCAATGTCTCTATAAGCTGTTCTTTACTGAACACATACTAAGCAATTCTTTATGGTGCTTAAAACCAAGGTACTGTTAATATGTTACCGTAGCGCATTTTTCTGAGCCTCTCCAAATTCAAAAGGGACTGTAATGACGGCATCATTGACATCTGATCCCAAAGCAGACTGTGCGGTTtctgaaacaaatcaaacaattataAAGTTAGAAAGGCCTGCCAGAATGAAGTGCAAACCTTCTGCTTAGTCCGTGATTTCTGGATGAATCAATCAAGTTAGTAAAGGAACACACACAACCTGTAATTCTGTACCTAATTAAAGATGCAGAattagttttacatttctgtcatcAATCTGCAATTGAAGAGAGCATTGACAAAATCCTAATTGTACGAAGAGTAAACCTTAACACATGCCGATACGTTTAGTTCCGAGAGGCAAGCTTCTTCCCATGTAACACTCACctttcatctttttaaaaatcaattttgcCACATCATCCGGCGAAACTAATTTGGTAGAGTCCCCAGTGTCGATCTCATACTTCGGCTTGTCATCTTTATTGACAACCTACAAACACATAAGATAAAgtacatgttgttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140636 lncRNA upstream 8427 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 15487 19626813 ~ 19628164 (+) True G112295
TU140602 lncRNA upstream 147886 19495534 ~ 19495765 (+) True G112275
TU140584 lncRNA upstream 247454 19395917 ~ 19396197 (+) True G112259
TU140557 lncRNA upstream 543253 19095628 ~ 19100398 (+) True G112233
TU140697 lncRNA downstream 294537 19940493 ~ 19940975 (+) True G112350
TU140733 lncRNA downstream 337049 19983005 ~ 19983296 (+) True G112380
TU140780 lncRNA downstream 630037 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 891987 20537943 ~ 20538220 (+) True G112430
TU140791 lncRNA downstream 917101 20563057 ~ 20563275 (+) True G112435
AMCG00006771 mRNA upstream 1480 19636117 ~ 19642171 (+) True AMCG00006771
AMCG00006770 mRNA upstream 22365 19611319 ~ 19621286 (+) True AMCG00006770
AMCG00006772 mRNA upstream 74893 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006769 mRNA upstream 101685 19537333 ~ 19541966 (+) True AMCG00006769
AMCG00006752 mRNA upstream 1243460 18368664 ~ 18400191 (+) True AMCG00006752
AMCG00006779 mRNA downstream 1174 19647130 ~ 19650694 (+) True AMCG00006779
AMCG00006778 mRNA downstream 51475 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006783 mRNA downstream 226050 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006781 mRNA downstream 238766 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006784 mRNA downstream 303185 19949141 ~ 19955839 (+) True AMCG00006784
TU139270 other upstream 6600203 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10076300 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 10919585 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11466865 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 11988457 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 1291541 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1402380 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1496909 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4386157 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4658823 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile