RNA id: TU140733


Basic Information

Item Value
RNA id TU140733
length 292
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G112380
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19983005 ~ 19983296 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTCACATTGTATTGCAAAATGAGCTTCTCTCTGGTCCTTTGGATGGTGCCGATGACGTAGACACAGTCGTGCAGGGCCGAGGCGAGCGGGATGTCGTGTGACAGGGACATGGTGAAGTGGTAATCGGTGAGGGGCAGAGAAGAGACGAAGGCCCAGGAGTCGGTCCAGGGGTTGTAGCGCTCCACTGCAGTGTACAGGGCAGTGCTGGAGTCGGGAGCCACCAGGGTGTCCAGGTACCAGCCGCCCACTGCGTAGATGTACCCCCCACACACTGCTGTGCTGAAGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140697 lncRNA upstream 42030 19940493 ~ 19940975 (+) True G112350
TU140640 lncRNA upstream 337049 19643651 ~ 19645956 (+) True G112305
TU140636 lncRNA upstream 347781 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 354841 19626813 ~ 19628164 (+) True G112295
TU140602 lncRNA upstream 487240 19495534 ~ 19495765 (+) True G112275
TU140780 lncRNA downstream 292697 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 554647 20537943 ~ 20538220 (+) True G112430
TU140791 lncRNA downstream 579761 20563057 ~ 20563275 (+) True G112435
TU140792 lncRNA downstream 580202 20563498 ~ 20563788 (+) True G112436
TU140795 lncRNA downstream 582230 20565526 ~ 20571427 (+) True G112438
AMCG00006782 mRNA upstream 11607 19966029 ~ 19971398 (+) True AMCG00006782
AMCG00006784 mRNA upstream 27166 19949141 ~ 19955839 (+) True AMCG00006784
AMCG00006781 mRNA upstream 49809 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006783 mRNA upstream 108416 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006778 mRNA upstream 276075 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006786 mRNA downstream 13228 19996524 ~ 19999748 (+) True AMCG00006786
AMCG00006787 mRNA downstream 32649 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006791 mRNA downstream 279004 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006792 mRNA downstream 361105 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006794 mRNA downstream 548059 20531355 ~ 20535351 (+) True AMCG00006794
TU139270 other upstream 6939557 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10415654 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11258939 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11806219 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12327811 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 954201 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1065040 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1159569 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4048817 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4321483 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile