RNA id: TU140791


Basic Information

Item Value
RNA id TU140791
length 219
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G112435
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20563057 ~ 20563275 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTATTGCCCAGCCCCTTCCACCCACTCACCCACCCAGCCAGCTAGCCAGTCAGCCAGCCCATCTGTCCGGAGTGATGTCCTACTCTGCCAAGTGAATGTTGCATGAACTCCACTAGAACGTCCCGTCTGTGAATGCTTGTTGTCactgccccccccagccccagccccattTTCCTTCCCCGCACTCTCACGTTTTTGGCCTCTGAAGGTTTTCCA

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140786 lncRNA upstream 24837 20537943 ~ 20538220 (+) True G112430
TU140780 lncRNA upstream 286825 20275993 ~ 20276232 (+) True G112424
TU140733 lncRNA upstream 579761 19983005 ~ 19983296 (+) True G112380
TU140697 lncRNA upstream 622082 19940493 ~ 19940975 (+) True G112350
TU140640 lncRNA upstream 917101 19643651 ~ 19645956 (+) True G112305
TU140792 lncRNA downstream 223 20563498 ~ 20563788 (+) True G112436
TU140795 lncRNA downstream 2251 20565526 ~ 20571427 (+) True G112438
TU140827 lncRNA downstream 75421 20638696 ~ 20638986 (+) True G112465
TU140836 lncRNA downstream 84103 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA downstream 87429 20650704 ~ 20652823 (+) True G112470
AMCG00006793 mRNA upstream 181 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 27706 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006792 mRNA upstream 207693 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006791 mRNA upstream 300258 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006787 mRNA upstream 516033 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006797 mRNA downstream 57467 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006798 mRNA downstream 81954 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006801 mRNA downstream 104073 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006804 mRNA downstream 112591 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006803 mRNA downstream 158528 20721803 ~ 20751442 (+) True AMCG00006803
TU139270 other upstream 7519609 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10995706 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11838991 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12386271 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12907863 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 374222 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 485061 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 579590 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3468838 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3741504 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile