RNA id: TU140795


Basic Information

Item Value
RNA id TU140795
length 5902
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G112438
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20565526 ~ 20571427 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaagtgaatgtttggCATATATGCATAGTTTGCCACCTGTCAACGATGGTGGCGATGGACCTTTTTATTCGAACTGAACGGGGGGATGTTTTGCACAACACAAGGTGCTATTCTGATGCCATCCATGTGCAGCGAGCGTGGGGGCACGTTTGGATTATTTCAGCACTTTCACCTGGACCCTGCTTGGGTGCAGTTAACAAAGTGTTTTCCCAGATTCAGATCCGTGATAAGATATCGAGAGACGCACCAATGAGCCATAGAAGGATAAGCCACCCGATCATCTCTGCTATATCCTCGATGTGCGAGGCACTGTGTCTTGGAGGCTGTTGTTCCTGTGCACGGGTTAGACTGGATTCGAGCGAGGCCAGGGTGGTGCCAGCTGTCAGTTGTGTGTCGCCTTACACCTGAAGGTAATTCATCTTTAGCTGTAACGCTGGCTGAAAACTCCTACACAGAAATGGCAACAACATCAGCTGGCTATGAAGCTGCGATTTTTCTTTGTTGAATGCAAGGTGTTGTGTGTAGCGATTTTACACAAGCCGGGCTCTCCATTGCTTCCCATCTGAGGCtttttgcagtgttttccaGAGTACCCTTGCCCCAATATTGACTTCAGTGCATTCTCCCACATTATTAAAGCGACCAAACTAGGGTGACAATGCAAATCAAGTGATATATTTGACATTAGCAGAAATGTACAcaataagcattacaaaagtgcagtaatacagttGATACACAATACAATTGAAGCatgacaaaagtgcagtagtataatcaatacaaaatacaataattatacatcctagttcaatgaggaaacaagtgcagacaaaatTAAGTTTAGGTGACATTACAGTGCATTGGGACAAATCAAAGATGAATTCCCAACTCTTTCAGATCTCACTGTTCGGacgcatttttttattttttttcattaaacaattcGTCTGTCTACCgaatacagatatttctgatGATGAGGACAACTTGTACTTTATATGAATTCTAAGAAATAGTATTGTGTTGGCATTGAATGAATTTATTTGgaagaacatatatatatatatatatttgggttttttaccccccaaaaaaaatcaGTCTGATTCAAACCAAGGGTCCAATCCTAAACCAAAttgtagaaaacaaatattcagttttaGCTTGCATGTCATATGATTCTAGAATCTTTTCCGGTAGTCACTAGTCCGGATTTCCGCTTGGGGAGCCTGAGTACTTGAACACTACAGTGGAATAAGCACTGAACAAATCGAATACAAGATATATAGCCAAATCAAATCAGTCCTGCTTCTAACATCATTTAAATGGATAAAATTGATTGTGGTTATACCACTGCCAGAGCTTCTATTCAAGTACTGTTAGCAATGAGGTGAGACCACTGTCTGTATTTTAACATAACTAGACTCTATTCCATAAGTGGGAGAAAACATTGCAGTAGCATCCCTAGTGCCAGAGCTAGACTGCAGTCTAATGTGCTAAATGCACCGAATGTTAATAAATGCACAGAACAGGCATTCAGGAGGGGGAAATGAAACCGCAGGAATACTGGGGAAAAAGGAAATACTGTTGTGTGCGTCTGTCCCGCGTGTGTATTTCAGTTGGGTGGAGGTGCACTggttttggtttgctttttatattcttatttttgatGGTCAGATGTGTTATGAGATGAaaatttcatgttttaaaaaaaaagaagaaaaaaatagtgCCAAAAAAGTATTGAACTGTTTTCtctatctttaaatattttatttgttgaaatGATTTTTTGAGCTGTTTGATTCAGCACTATGGTGCCATCTCCTGGAAATCTTGAGTAATACTGACATCTGCTTAGaatatttactgtatgtatataatcatTTTTGGTGGAAATACaggtttttacatttgttttagtttttttgttgttttggggggttattttattattataattttttgtttgtttttctttttttggtttcgTAAaggagtatatatataaatatataaattacattcttTTAAGGGGTAtccattaacatttttattaatattttgagaATTTTGTTTGAGCAACTCTGATGGTTTAACATATTGTTTAACTGCATCTGAAATGCTAAAGTGGATTTATTCCTGCCAACGTCTTCACCCCCGAGATCCCATAACATGTAGTGATGAAGTGAAATGCAGTTCAAATTAGTGTTGCTTTTCTGGGTTTAGGGATTATGAAGAAACTATTTACTCTCTGTTTGTACGTCAACGTTATTATATacagatgcaaaacaaaataataatttttctaaaaaaaaaaaaaaaaactttaataaacaCATCATTCACATAAAAATGTGTAGGGTCTACGTCGTCTatcttctttttaaaacaacaacaacaacaacaacaaaagcacaacAGAACGTTTTGGGTCCCAGAGAAGTGCAGAGAAATCCTGCTCAGAGATTTGAAAGGCATTAGGTTATAGATAGCGGGTGATTTCCACGATGGAAGgccttttctttcttgcacTGTGAGTAAAGATGCTGGACTTGTCAAACTAATTTCTGTCCTTTGCCTTTCAGACAAGAACCATGTATCTATCTTGCCTTCATTGCACTTTGTTCTCATCGCAGATCTGAGGCATTCCTGATTATTATAGGCACCCAATTAGATAGATAGGTTCTTTCTTTTTGACCAATCATAATTGGAACCAGAGATCCGTCATCATTCATTGcgatctaaaaaaataaaataaatatctttgtCTCTGGCATTACCAGTCACGCTTTGCTGttatagtttagttttttgtttgtttttgccattCTTATACCTTAATGTTCCGTACAATTACTTTAAATCTGACTGGCTTCGATtacaaacaatgcaaatgaATGATGTCCTTCCTGTAATTCATTAAAGGTTTAGTTGTCTTTAGAATCACTTTTGGAGAATGGGATTCCCCTTTTTCTCTTGGGTGTTCGAAGATGTGAAGaacaactttattattctttcaaGTAAATATGGGTGTCTGTATCAGATAGTTTTCAGGAAGCTACCATTGCGAATGACAGAAACGAagcagacttaaaaaaaaaaaaaaaaaagtggacactgcatttcaatatttttcctAATGCACCGTGTTCTATTGGCATTGCTTTACTTTACTTATTAAGCTGTTTGGAACAGTAAGCCATTTTATCACAGACATTTTATAACAATCATTTAGTGGCGTTCCTTTTATAGGCATAACTCTACTAGACTAATCTAAATCCTTCACCATACTTTTAATTTGCATAGCAGCTGAACAAATGTGTCACTAACTGATGGTATTCCTACATGGTCATATTACATCAAAGCAAGAAAAAAGCATCAGTCAGTATAATGACTTAAAAACAGTCAAAATCTGAAGTAATACTTGTTTTGTATTCCAATTATaggtaaattaataattttatactttatatatcCCACCCTCTCTTTCTGTCGCTGGTGTTGGGGTCCAAGAAAAAAACGTGATGTAGCAAGACGCACTCAAGAAAAGTCACAAATACTGTACAGCCAACTTTAGTTTAATTGCAGGCTCCAGAGATTGTAAACAGGGCAGCAATACATCTAGAAACAGAATAAATGAAGTGATACAGTGCATAGTGTAGCTGtcatactgtactgtgcattttaaaataatccagtATTACAGTAGACAAACTGTAAAAGTAATTACATCAAaaatttggtaaaaaaaaaaaatgaggttAATTATATTCAGAGGCATGCACATCTTAACTATAAAAAAGCGGAGACAACCTCGATATATCTGATTCAGCGATATAATAAGGGGGTggtgcatatttatattttatatatatatattaaatgttatatgAAAAGAGTGTACGCAAAATTCCACAATTGTGCATCTATCCTACAAAATCAGAAACATTGTGGATTTTGATAGGCTGTGAAGTTCAATAGGTAGATGATCTTTATAGTTTCTACAGAACATGGAAATAGCAGAAAGCAGATAATTTTGTGATGTGCGCCGTGCCATTCCAGCTACTGAGCCCCCTGGTCCTCAGAGCAGAACTGTGGAGTTCCTCTGGATTGAAGGGGGTGGTGTTGTGTAGTAGAGTCACTCACTCTGGTCCTGGACAGCCTTAATTGGACCAGGTCTTTACTCATTGGATATTTAAAACTACCTTAACAAAAAGTATGGAGGCTCTCGAGGAACAAGGCAGGAGACATAAAGTAAAAACTCAGATAGTATGCGTTTGTGATTCTGCAAAACACTACCTTTAAAAGTGAGGATTAGTAATTTGTTCCAATGGGTATTTCTGACAGGTCGATAAACAACTTTACCACTgacattacatataaaaagaaaaagacaattaattatgtttatttctgaCCTTTAAAAGGCACCTcagcatattacaaatatattttaacactacatttatttctttcatAGCAAAATGAGATTTACCTAGCAATCCAGAATGCCCACTGAATGTACAACAAAGAGTAGGAGACTCATCAGTGTGAAATGAGAGACACACAATATTACGCTCAAGTGATGGAAACTGGACCATCTTTTGTGAATCACGATCAGTGCTTTTTCAGAAAGCTATAGTACTGTACACATATACTAGGGATCAGATAGACATGTTTAAAGATTTTTCTCAATGCAATTTTCTAGTATGTATTTTGACATTGCTGCTTTATCTTGATGTGAAGCATATTTTCTATGAATGTGTCTGCTGTAACTTCTGTTTATCATTTATTTCACGGTATAACATCATCTTACAAATTATGCTTATCCACACAAAGGCTCACAAACCGCCATGCTAGAACATAGATGGCTCCTATCAAACTTAAGCCAAAAAAAGTCATCTGATGAGCTACGAAGTCCTGgggcaataaagtaaaaataaaaatgtgtgtataccATAACATTCCTGGCATTGAAATTGAGCTGTAGATAACTGAATTGACTTTGAATAAGCTAGACGAAAATGAGAAGATTCAATTAAATGGAATAAGTATTCAAATGCATCATATCCTTTGGGATTGCAGTCTAATGCCAGTAGTGAgacttaaaatgttaaatataatgaaattcAATCTAGtaagaaaaggaaatatgaactgaaatatttcacatttgtaatAGCACGGCCTTGGTGGTAAGGGTGTACTACTTTTCACCTCCAGTGTAATTTCACCTCTACGTTTATATATCTTTACCAGATTTAAAGGGGAAGTTAGTCAAACATGTATGATTAGCATTGTCCTCAAATTTGTGTGATGCTAAAACAGTAGTCTTTActtaatttatacatatatttatatatatatatatttgagttacagtgcatttatttgaaaaagggtTCAGTACTTCATCAAGAGACATGCTATTGCATTCGGTGTCAAGTTAGTGCTTTTGCAAAATGAAGATTTTACACAAAAGGATTCCTCCAATCTCTTTATCTTAATATTTAAAGAGCAAATGATTAGATTATTGTCAGACTTGAGGGGGTGGGATTGAATTCCAAAGCATTGTGCTtaagttttcattatttatgatATTTACGTCAATATGTTCGATTTGAGTCACTGCTCTCCCTACTGACAGGTGGCCTGTATAGAATGTTTTACTACAGATCAAGTTTGATGAACATTTCCTTACTTTCTGTCAGCGATCGGCTTCACCTGTTCAAATGTAGAGTTGTGCAGAATGGGCACATGCACAGAAATACCCACTCAGTGcttctctttttaataaaatatgcttcTCACCTTTTTGTAAGAGATATTATTTAGAAAATTAACATGAATTTGGGGTGTAAGGCTAGCCCTCTAACCTTGTTGTTGTGATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140792 lncRNA upstream 1738 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 2251 20563057 ~ 20563275 (+) True G112435
TU140786 lncRNA upstream 27306 20537943 ~ 20538220 (+) True G112430
TU140780 lncRNA upstream 289294 20275993 ~ 20276232 (+) True G112424
TU140733 lncRNA upstream 582230 19983005 ~ 19983296 (+) True G112380
TU140827 lncRNA downstream 67269 20638696 ~ 20638986 (+) True G112465
TU140836 lncRNA downstream 75951 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA downstream 79277 20650704 ~ 20652823 (+) True G112470
TU140886 lncRNA downstream 196109 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 348100 20919527 ~ 20923505 (+) True G112535
AMCG00006793 mRNA upstream 2650 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 30175 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006792 mRNA upstream 210162 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006791 mRNA upstream 302727 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006787 mRNA upstream 518502 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006797 mRNA downstream 49315 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006798 mRNA downstream 73802 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006801 mRNA downstream 95921 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006804 mRNA downstream 104439 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006803 mRNA downstream 150376 20721803 ~ 20751442 (+) True AMCG00006803
TU139270 other upstream 7522078 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10998175 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11841460 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12388740 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12910332 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 366070 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 476909 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 571438 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3460686 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3733352 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU113959 False 3945 lncRNA 0.39 2 NC_053119.1 14017461 ~ 14021425 (+)