RNA id: TU140833


Basic Information

Item Value
RNA id TU140833
length 1778
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G112470
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20647378 ~ 20725442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTCCATTgagattttttgtttattgtgagTCTTCCTTTCAATAGTATTTCTCATTTAGATTTCACAAGGGACCCCTTAATTTTACTGCCAAAAGTACAACAGAAGAAATAGAAAGAATTGGCATTCATCATAATAGCTCCTCTAAAACAGTAACCATATTTAAATTCTTAGATTTGGAATTATACTCCTCAATTAACTTTCAGAGCCGAATATGTGTGAGCTGTgtgcataaaatatattaaagagtGTTTCATTATGACTTATGATTAcgacttttttattgtttgcagGTACAGCTGCTGCTGAAGGACAGAATGAcaccacacattttcaaatcagtttcagatttttctttttttattcatttatttttttaagaaaacaatgcgTCCCGCCTTGATTATAAAGTCCTGGGCGAAATTAAGTCATCTGAAGACAGTTTTAGGAGACTTGGGCCCGGACTAAACCCACACTTTAACCCACCTGCCAAAATGTGTTGGCAGGTGGGTTGGAGATGCGTTTGGGTCCAGGTCTATGTTACTTTCCACTGTTCTTTGAATAACTGGCATTGTGGTCCCAGGCATTCCAAAGTGATCGTGTTTTCCCAGTGGGTTCCCTCGACCCACCGAACCATGCAACGCAGACAAACCAGAAGCTAAGGGAAAGGGTAAGGGAAATTTTCTGGTTGTTTTTGTAGGATGCTTCTGTGTCTTTGTCACGTTGATACGCTGCTTCGAGGTCAGTGCTTTCACGCTTTAAGATCTTGACAAGCTGTGACACTGGATCTGCCCACCCACATCCCTGACTGGGACATGGTCTCCCTGTCGTGGGAACAGGGATATcgccttctcctcctCTGAATAGGTTTAAGCAAGCAGAAAAGGATGGGCCCTCATCGTTAAAGGCACCCTgtaagataaatacataatataatgtaGTTAACAATACAGTCAATAACAGCTACCCCGCCCTACAGAGAAACACTTTTAAAGAGCTTACACCCACTTCCCTGGGAAATCAAAGCTAATGCAAAGCAGTCAACAGGTCTCAAGACTCATTTCCTTAAGGTTAATGCATTCAACTTCAAAATGATAACGATTTAAAATCTTCAGCAATGCCCAGATATATTGCCCGTGCCAAGTTTAATGACAGTAAATAGTGTAGATCTtccaaaataatatgaataatgaaaaagcaaataaataaataaataaataaaaatacaatacacccCTTTTGTACACAGTATTCCCTTACAAGGACATGGGCTTTATTTAGAAAACAGTAGAATGACATGTTGGAGAAGTAGTTTTAAATCCCTTATACACTCATTTGAAGAATGATAAATAACAAGCATATTACAAGCaagacaaacacagaaatacaatataaaacaaaaatgtgcattatttgtgTCATgcatgtaaaaaacaacaacttctaAAGCAAacagtatttcattttcagtcttcttcagttttaatatatatgtgtatgaatACAGGTTATTTATTAAAACCAGACTCACCAGTCACGGCCTCCCTGCGCAGCAGCTGTGCGGGATGAAGAGACAGACGCACGCAGCGCTGCTGTTTATATACGGGCCGCACGTCATCTCACAGGCTCCACCCACACACCTATAATGCcccattttattgtttttagcaGCAATGACACAACAATTCAAAGTTGTTATACATGACCGttcattaattttaaagtaaaatcctGTAAAATAgggtttacatttctgtttgttactCCCCGGACGCCGAC

Function

GO: NA

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140827 lncRNA upstream 11718 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 79277 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 86916 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 87429 20563057 ~ 20563275 (+) True G112435
TU140786 lncRNA upstream 112484 20537943 ~ 20538220 (+) True G112430
TU140886 lncRNA downstream 114713 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 266704 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 277411 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 370110 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 371456 21024279 ~ 21031984 (+) True G112566
AMCG00006798 mRNA upstream 3463 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006797 mRNA upstream 22081 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006793 mRNA upstream 87828 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 115353 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006792 mRNA upstream 295340 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006801 mRNA downstream 14525 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006804 mRNA downstream 23043 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006803 mRNA downstream 68980 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006802 mRNA downstream 107604 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006809 mRNA downstream 255891 20908714 ~ 20918410 (+) True AMCG00006809
TU139270 other upstream 7607256 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11083353 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11926638 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12473918 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12995510 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 284674 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 395513 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 490042 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3379290 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3651956 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile