RNA id: TU140836



Basic Information


Item Value
RNA id TU140836
length 629
lncRNA type read_through
GC content 0.43
exon number 3
gene id G112470
representative False

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20647378 ~ 20725442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tattgtttcacatttttctatttttattattttttaaagcaggaaGATATGCAGAATGccttttttttcacatcacttttttttttttttttttcagtttcagatttttctttttttattcatttatttttttaagaaaacaatgcgTCCCGCCTTGATTATAAAGTCCTGGGCGAAATTAAGTCATCTGAAGACAGTTTTAGGAGACTTGGGCCCGGACTAAACCCACACTTTAACCCACCTGCCAAAATGTGTTGGCAGGTGGGTTGGAGATGCGTTTGGGTCCAGGTCTATGTTACTTTCCACTGTTCTTTGAATAACTGGCATTGTGGTCCCAGGCATTCCAAAGTGATCGTGTTTTCCCAGTGGGTTCCCTCGACCCACCGAACCATGCAACGCAGACAAACCAGAAGCTAAGGGAAAGGGTAAGGGAAATTTTCTGGTTGTTTTTGTAGGATGCTTCTGTGTCTTTGTCACGTTGATACGCTGCTTCGAGGTCAGTGCTTTCACGCTTTAAGATCTTGACAAGCTGTGACACTGGATCTGCCCACCCACATCCCTGACTGGGACATGGTCTCCCTGTCGTGGGAACAGGGATATcgccttctcctcctcctAGTTCCCTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140827 lncRNA upstream 8392 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 75951 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 83590 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 84103 20563057 ~ 20563275 (+) True G112435
TU140786 lncRNA upstream 109158 20537943 ~ 20538220 (+) True G112430
TU140886 lncRNA downstream 42094 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 194085 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 204792 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 297491 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 298837 21024279 ~ 21031984 (+) True G112566
AMCG00006798 mRNA upstream 137 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006797 mRNA upstream 18755 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006793 mRNA upstream 84502 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 112027 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006792 mRNA upstream 292014 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006802 mRNA downstream 34985 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006809 mRNA downstream 183272 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006811 mRNA downstream 212105 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006815 mRNA downstream 362919 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 451106 21176548 ~ 21200739 (+) True AMCG00006818
TU139270 other upstream 7603930 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11080027 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11923312 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12470592 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12992184 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 212055 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 322894 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 417423 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3306671 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3579337 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile