RNA id: TU140871



Basic Information


Item Value
RNA id TU140871
length 6901
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G112496
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20714083 ~ 20756786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTAActgatgaaatatttatttaatattttgaatttacaGCCTAAATTTGACAACAGAAAAGAGATACAGTCTTGTattcatacaaaaaaagaaaagaaaaataaaccaccaGCATCagttttacaatacaaaaggCTTTTGACTCAGTAACAGAGACTGTTaattctgaaataataaaatgcacagaCTTTGAAGGCagtacagatgttttttttttgggggggaagggagttttttttttttttgtacctcatatacataaatacatacatacaatacttACAAAGATAAAATATGACACACTCTAAAGGTACTATGCAATTGAAGCATCTTTGAGAGAAGggcttgctttgtttttctctgtaacCCAGATTCAATACAATGTAACGTCAAGGCCACAAAGTGCTAAAGCGATACGGAGCAGTTGTGTCGGGTCGGAGCGGGTCAACTCAGGAACGGGGACACCATGGAGAGTCGCACGGGACTTTGTAACGAACCCTCGGTTTGCTAGCACAACTTGTAGAATAGTATTTAACACTTAAGTTACAGGGATAGGAGCCTAGTCTTTACAGTATTTGTCAAAACACAGGGCTTTATGAAATATGCGGAAAGAAGTCTTTGCAAGTTAGTGACAATTGTAGACATCACAAACGGGTGCAGGGCTTGACAATTAGGACTGATTACTTCTGCACAAGTTTAAAATGCAGTGAACGTTGGGGGGCTTTAGACATTAATATGATTTCCATCAGCAGCCAGCAGTGATCGAACCAAACACTATTTTCTTCCGGTAAGACCGTCCTCAAGGCCTATTGTTAATGAGGTAATACAGAAGGCAATGGTTGATACATTTGCATTCGTAATTGAGTAGTTTTTCCCCTGACTTCATTCAAAACATCCGGATTGAATTAATCAGGCTCCTCTGGTGAAACATGAATGCCTCTCTAAGTACACTTGTGCTGACAGAGCAAATACAGAAACAAGGAATTTAGGATCTCGTCCCAGAGATAGATTTATTCAATAAATGTAGTACATTTGTAGTACATGGAAGttcttttactttactttactttttttttacgtGTAACTTTCTTAAATTTTGCATCAGTTTGTACACTTTCTCTCcctaacaaaaataatcaataatcaacACCTAGTTCTTTTAGGAAAGCTATACTCTGGGAATTTAATTTCTACAGAGAATGGCTTCTAGAAAGTCTTATATGTACATGGACTCTATGAGATGGGATAGAGCAGTTTATGTTGcagtggaaaaaagaaagagaggacAGTAGAGTTTTTACTTTTCCTGTATCCTGATCCTGGAAGCAGTTACAAATGCTTTACAAATCGCATGCTGGGGCAAGACTAATCACGAGAATGTTCAGGTGACAAATTTGGTGCTGGAAGGCATGTCCGCTCAGAATCGAATGCATACACATTCTTCTTATTCTTGTAGTACTTCAACAAATATTTGACACTATTACACACAAGCTGGAATTCCAAGTATTGAATAACCAACTCAGATTTGAAAACAGGAGTCCTATTGGTTAGCAAATGCCCTGCCTTCTTCCCCTccaatacaattcaattactATCCCCTTACAAAGATGGTTTCTAGATGAATAGGTACAGTTTATCAATTTCCATCCAAGTGATTTAATTCCTTACACTATTTACGGTTTAGGGTGAAAGTCTTGAATGACTGCTTTTGTACATAAACTCAGTCTGGAAGTGAAATTTGCCACGGTCTGCCATGGCAAAATAAATCGGGAATCACTTATTATAGGACTGCAAATATAGGAAGAGTTGACATAAAACTACAGATGAGGCTTCACAGACATTATTAACGGCAGTGTTTATAACTGGCTGGCGAGAAGCAGTCTCTGTTCCTGTCCCACAGTCCCCATCCCTGCCTTCTACATGTGCGTTACTTTGTCTTTAGTGGTCGTTTCATACTGATCAACTAATGAAATGCTGTCGGTAATATAGTAGAGACTCCCCAGCTTTAAGATTCAGTTTGAGCTCCACAGAGGGGGTTTCGTTTGAGTTAAGAAATCCTTTGACTGTTTTTCAAAGTCCAAATTTTGGGAGTCataaaaagcaaaatagaaCATACTGTAAACGCATTCAGTCAAAGTGTAAAGCTTTCCCAAATATACTGGCTTCTGCTGCGTCAATGTGTTTCAATAATCCCACCCTGCTTTTCCTCTCAATATCAAACTTGAATTTCCtctcttattttgtaataagAGAACAAAACACTACAGTTGCGTGTTGATCGTTTCATGTATGTGAGCCTGTATTGTGTCAACTACAGTTTTAAAGTTGAAAGTTCCTTTTTGAAAAAGTTGTATGTTGTGGTTTGATAAATTGCAAACTGCTTTTGATGACTGATGTGCCACTGTACCCTTGgttttaaatcatataaattataaacacaaacCAACCACCTACGGCTAAAAATACTACAGTAAAACTTCCTGCGATCTGCTCCCGTCAGAATGAACACTAATCCGCTACTTTCTGAATCCCATTGATATTTAGAAATGGGTGACTGTTAATTagattgaaatatatgtatttttacagacCCATCTAACCGTTTTCCCAGCAGAAAGTTTTAGAATTGAGCAATTGCTTTGGCCTTGTGTTCATCTCCAGACCAGCCTCAATAAGGCAGTGGAGTAAAATGCTTTAAGAATGGAAGAACAAAGACCAAGTGGAAGgataaaataattcaatgatAGAGAATGAGGGTTGTGTTGTtgatatttcaatatattaaaatgaaaagctcctaaatacaaaataaaccatgctTTCAATGTACTACCTCAGTAACACGGCCTGTGACTGCACCGGTCTAAACGGATTCATTTCAGTGGATCTAGAACACTATCTGGCTTCTCGAAgcagaagagagaaaagaaaaccagtTCAAATGGACTGAGCagtggcaaaagaaaaaaacaaaagaaaaaaacaacagtatttatattaaaacattggCCACTTATgccacaaaatacattattcagaaCTCTTAGAAGTCCTCTTCGgtgttaaaacaaacacacactgaaaagcTCCTGCAATCCTCTCGTACGCTGACATACTGTATCAAACTAGAATCAACATCCCAAATGGGCGATTTTCTAATACAAatccaatttaatttcaaaagtgCAGCTACTACAAACACGTGCATATGTAACCCAACAAGTCAATCATAGACCTTTTTGGTATTTAAACATCCCGTTTAAAGACTGAAAGTGTTCAGGAGCAATGACAGAAGACATGTTAATGCTGAATTAATGCACTTAAGCATTTTTGGAGAAAAAGGCAAACGTTATTGAAAGGAAGCATGTTTTCACAAGTAACTGATGCTGGggtgaacaaaaataaaatattattgcctttgttttcatttgttacaGTGAAACCTGCGAAggaactttttttctttttttttttttttttctgaggtgCTGATAAACTAGGCTttcatcaaaaatatatattacgtTTACATTTTACCAAGGAGCAAAGCCACAGCCAAATATATGTTCaaattttataatatatacagcataAAGTACATATCGACATTCACGGCATGTGCGCAGTGGTGTGACATCAGCTCGTGGGGAAAGTGAGGCAAGTTGCTCACTTTTCTTCCCTGACAAATCATGCCGTGTATCAGTTTGAGACAAAACCCAGACATGAACGTGTCTCTCGAATCCATGTTCTCAACACTTTCTTCTCGTCACTTGGCAAGGCTTTTGCTGTAACCAAGTCATTTTCTTGTACTCTCTGCATCACAACTGACGCCATGGGGAGTTAAATTCACATACAACTATCAGAACTGACCTAATATGCTCAGTCTTTCTGAGGgtgaaataattgaatgatTTACGGATTTATGGTCAAACAATATGTACACGTAAATCATCTCAAAGAGTCTGAAAATGTCCAGTTACAGCAAACTTTGCGGTGATGTGTGGTACAATGACCAGTCTACCATTATGCCAATTTCTATGGATTTCTCACTCGTAAAGGTccagtttaaaagaaaacttcCATTTCTAATCAATACATAACAAATCCATATACACTGCTCTTTTAGCACTTATTTATCAGTTCTGACATCTTCGGAACTGAACACTCCTTTTAGTTTGAAGCAGATAAAGGGAGAGGCAATGAGGAAAGAAACAAGTTGTCTTTTACAAATCTGAGGGAATCGGCAAACATACACAGtgaggaaaaaacatttcagaatgttttaaCAATACATAAAGGTATTCAATCTAACAACAACATACTTGTGGatagaaaaaaatgacaatgggCTTTTGTTGTTACTGATTTCCCAGATTTCCCCCTTCTTTTTGACATCCCAGTTTCTTACTGACTCTTTAAAAAAACCTGTTCATTCACCTCTATAATACTGCAAAGCATTATTCTTTAATGAACTAAGCATTTCAAAAAGCAGGACATATCTGTTAatccaagtaaaaaaaaaacatgtgagtCATAAAGGAGGAGAGGAGTCTGCTTCCTAAAGAAACAACCCGTTTCTGGTGCAGCACATCTTTTACACTGAACCTTTCTCATCTAGGTTGTCTGGAACTTGTTGAGGAAAAGCGAGATTTGGTTGGTTAGAATTACTGAAGTTAGACAGTTTCTATGATACACAAAATCATttggttaaaacaaaaagcaactaggattttacaacattaaaaaaataggcAATACATTTTGGCTTTaaaaaaaggcagagaaaatATTCAGTGAGAACATTTCCCCTGCGACTCTCTTTCCATTATagattcaaaaaataaatgtggaaaatcACTCATACAGTGCAGTGAACAGATCAATTCTTGCCAAGGGTTTACGGAAGATTAAAGGCTAACGTCTTTTTCTATATTCTTTCGTATTTCTTAAAAGCACTCTAAAATGATCACCCTGTCCAACGTGTGCTACTCATCCAATGATGCGGAGGTGCtaattctgaaaacaacaacctacTGAGGAAGGTTTTGAGCAATAGGTAggactaaataaaatactgtggaCAGAATAGTGTGGACAGTTTCAACACCCAGATTTTCAAGTGCAAACATCATAAGCATTACTAAACTAAATTTGGTACAACCTGAGGCTGTTACAATGCaaccaataaatatattaaaattaaacagacTGAAAAGGAACCCACATACATTGCAGTGCCTCGATGTCTCATAAAGACAAGAGTATCTGTAATAGCATATCAGAATTAGTGGCATTGCACAATAGCAACTCAacactgttttataaatactttgccatgtgtataataaaaaaaaaaaaaaaacattttgagtgTTAAACTACAGAAGCCTTCTCTTCTTTCCCAGTTTTGTGAAGAAACATTTATCTTGTTAGTCTTTTTTCTGCCTCTTTCCTGTAAGATGAGTTTAGAAAATAtcaagttgttgttgttgtttccttaTTCTGACTTGCTAGAAGTTAGAAGACTAAACAAAAATCTTCTAGAAGGGATGTCACAGAtttaagagaataaaataaataatggtatgTTAAGGTACTTAAGGTTCAGTCAACAAGTGTAGAAATATGTGCGGgtctttatttaaattttcaaaCTCTTAACAGCCTGTATATTTTCAGGCACACCAGAccatcatttattttctatttttcttctctgtttgaGTATCATTTAATGTCTCTTTTTTGGATtttgattaagaaaaaaaaacatttcccacaAATGAATAAGgtaattacaaattaatgacatatatgtataagttaaaaaataactaatatgaTAGCATATCccaaaaaactataaataagtGTAAATACTTTGAAATCTAGATAATAAGGAATTGCTTCACTGCAAGGGGAACATTACAAACTGGATAACTATACCACCAATGTGAAAGGGCCAAGCtatttttacacattcattTCCCTACTGGCTTTATTAGACCATCTTAAAATGTAGTGAGCTTTTTGTGATCTCATCCACCTATTAAGAACCTTTGATTTGTGacattaaaagggaaaaagaagCTGCAAATTCTTCAAGCACCATCTGGGTGCTGTGACATCCCTAATTGTAAGATTAGTGATTTATGTGTACTACCTCATTAAACATAGCTTTACCTGAATATATAAAAGCAAACTCTGCGAAGAGAAGGATTAACACCTCCACCTGAAAACAACACTTATCCCTGTTCAACTGTACAGTGACCGAGTCCCAGTTTCAAGGCAAGAGTCGCCCTACTCATTGTTGAGAGCATACAAACATTACCGTCTGCTCAAAACGTTCTTGTCATATTCATGCTCAACAGAAACATGTTCAATTTCAAAAAGAGTGGACTTTGGATTCGAGATAGGTctgatacaaaaatacatatattttttttttatcagtttaaaacaaatagtgaATCTGCACAAACAGCAGCTCAACACAGGGAGACATCACAGACATGCGCTGTGCGGGAAGAGATTTCTGACTATCAAGCAAGATCGTTAAGATGTGGCATCCCTGAAAAATGATTGGCTATTCTAAAAAGTGGTTCAAGTGCAGTCAGACAGATTCGTTAGGAATGAGATTTGCGGGGCCGCTTCGTTGGGGCGCGTAGCTGTTCCGTGTCCCTGTTACACACAACCAATACTGTTtaaaggagagacagagagagaaatggacGGAAACAGCCAGAGTAAATCTTCCAGGAAATGAAGAAAACGTTGAATCCTTTGAAACAGTAATCATATGTTCACtgctacatttaaacagtacaATTTCAACATCAGCTAAAAATAAGTTTCtgtaagaatgttttttttttttggatttttttttttttttttttt

Function


GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0017144 drug metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140858 lncRNA downstream 60424 20651041 ~ 20653659 (-) False AMCG00006807
TU140857 lncRNA downstream 61243 20651041 ~ 20652840 (-) True AMCG00006807
TU140855 lncRNA downstream 64467 20647320 ~ 20649616 (-) False AMCG00006807
TU140765 lncRNA downstream 634672 20078891 ~ 20079411 (-) True G112410
TU140629 lncRNA downstream 1082188 19623221 ~ 19631895 (-) False AMCG00006773
TU140949 lncRNA upstream 187383 20944169 ~ 20964562 (-) True AMCG00006813
TU140964 lncRNA upstream 240480 20997266 ~ 20997529 (-) True G112557
TU140969 lncRNA upstream 258587 21015373 ~ 21016048 (-) True G112562
TU140970 lncRNA upstream 260415 21017201 ~ 21017740 (-) True G112563
TU140975 lncRNA upstream 267920 21024706 ~ 21031872 (-) True G112568
AMCG00006806 mRNA downstream 6125 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006805 mRNA downstream 47138 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006807 mRNA downstream 61459 20647874 ~ 20652624 (-) False AMCG00006807
AMCG00006800 mRNA downstream 76479 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006799 mRNA downstream 96133 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006808 mRNA upstream 10976 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006810 mRNA upstream 162748 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006813 mRNA upstream 192090 20948876 ~ 20949746 (-) False AMCG00006813
AMCG00006814 mRNA upstream 275612 21032398 ~ 21048481 (-) True AMCG00006814
AMCG00006812 mRNA upstream 298154 21054940 ~ 21088079 (-) True AMCG00006812
TU140776 other downstream 477877 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1078158 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2372873 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3080638 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4960848 15752821 ~ 15753235 (-) True G111767
TU140946 other upstream 97271 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 2647389 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5743229 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6645814 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7510476 28267262 ~ 28292598 (-) False G113775

Expression Profile