RNA id: TU140886


Basic Information

Item Value
RNA id TU140886
length 5511
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G112510
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20767536 ~ 20773066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTCAGTTCTCTTGATACAGTTTATTCAAATCaggttaggtttttttttttcttccccccactTCCTCTAGGCACAATACAAGGAGTCTGTATGTGTAACACAAGACACAGAACTAAAATCCATATCCATATTCTAGattttgttcatgtattttaagGTGTGAAACGCTACTGgctacaaaaaaaattatatatatgtatatatatatgtatatatatatatacacacacacacacacccaatgggaaaacaaataacttaaaactatacaaaactgTTTATAACAAGAACATTCAGTTCCTCTATAAAAGGAAAAGTGTATTTCTGAGATGTTTTCATAAAgggaaaattataaaaatgttgctAAAAGATGCAGAACATGTAAATTGCATAAAACGAAGCCCTGTTCCACCTGACATTGCAAATTGAGCACAGAAGACCTAAAACTGATATTACCACCACATGGGGTAAAGAAACAGCCACTGAAGAACTGGATACATATGGAAGTGTATCCCCGGATATGAATCTCCTTCCGTCACTGTGTGTACAGTTGTGTACATCACACTTCAGGCATAAATTCGAACAATACATCTGACAGGGATATTGGTAGTCTAGGGCACCACCCCTGAATtcagtaaaaaagaaaaagctgaacATCTTATTGTCAGTCAAGTGGCTTTTTAGCAGGAGTCTAGAGCACACTAAGAGTTTAAATAAGGTCACAATAACCATCCATCTTCAGTAAATCACATGCAAATGTAATCTACCGTGGAATCTAAGCAAATTACACctcccctcccaaaaaaaaaaaatattttgaatggaCAAAATCTACAACTTAGAGGTCTTAGCTAGACTGTATAATCTGTGCTTTTGAAACTTGCAGTCCCAAGCCCCCCAAtgttaaacaaaaactaaatggtGAACACCCAATGagatatgtacatttatttgactGGGTTGCCTGAACATCCTTCTGAAAGTTTAGAAGAAATGAAatgacagattaaaaacaaagatgaaaacAGACAATACCACCAAATATTAAACCCAgaatgtttgttgtttaatcctaaaaaaagaaaaaagaaaatatggacATGATTGACAACATAACCTGGCTCAGAATAtttatggaaaaagaaaaaaaaaaaagcagctgaTGTTCTACACACCCCTCCAGACTAGGGAATAATTTACTCGCTGATGTTTGCATAGGAGAGTGGAAAACTACGCAGCCAGTGACAGTCGGTGTCAAATTGTCGATGGTGCGACACACAAGGTGAAGAGAGGGGCCGTTTTcctgaaatgaaaactaaattaaactgaaggTAAATTATTCCCTGAAAAATTAAAGGTTTGTTTCTTGGCCTGAAGACGACATAGTTCTTCTATGTCAGAAGCAGATTAtatactaaaaaaaatatatatgcaggtTTCACTTTTGTgtaagaacagaacagaaagaaagagtaGCAGTGTTAATACAGACATAAACAATGGCACATATTGGGAagctactaaaaataaaaaagtgatgtTTAAAGGGCAAACTTTCACCTTTCTTACACATGacaaagttaaataaattactaCCATACGTTACATAAAATTTAATAGTATATACAGTGATAGTTATTAGATAAACATCTATAATGAAACTGAAGTTTGACAAGACATGAGGAATACCATGTTTTTACACagcatggtgtgtgtgtgtgtgtgcatgtgcatgtgcatgtgtgtgcgtgtgtgtgtaggagtGTTTGTGTTCAAATGCATCGTTTGCCACATTTTCCAGTCCACCTTTTATAGAGCTCCAAAACAAAGCCTGGTCTCGCTGCAAGGTCGGCTCTAAGATTTAGTATCTGCTACAGcttctgttaaaaaacaacaaaaactctgTTACTTTCTTTAGCCTCCTTGGACAACAAGAGAGAATAATTACCAGTTTACTTTCCAGAGTAACACATTCTCTCGTTTATTGCCAGCCTCAGTTGACACAATTCCaaagttttccttttcaaagcaATGGGATCAACCACAGgacctctttaaaaaaaaaaacagggactCCTGtgaaaaaacttaaatataaacACTGTCGCATTTGTACTATCATACCGTCAAGAAAAGCCCTTCTAAGGCTGCCCATGAACCTCTCTAGTGAACGTCTGAATCTTATTAATAATTTAGCTCATGACATGGAGACAGGATGTTAATAACCCACTTGTACAATTACACAAAGCAGCAGCTGAGGACAAGGTGGTGAAATGAACTATAATAGcattaaatattagaaaaccCAATCATTTTTGTCTGTATTCATATTCACAGGAGCATTAGCCCTGTAGCTGATGAGGGATGAAGTTGCGGgtttttgattgatttactaattattttatttttttaaccagaaGGCCTGTTTGATTGAAATTGTCAAGTGAATGAAAGCAACACCTCCACTGGCAGAACGCATGTGATTTCTTGACCTCATTAACATGAAGAAATCTCCACTGCTGGACTACAAATACTTCTAGAAGTTCTCTTACATACATCTACACACAGAGCTAATTTAGTAGTTTCAGAAAGGTTTGTTCAAAATCAAAGGGTGTCATCAAGTGCCCATGTACTAAAGAGTGAATGAGATTCTACTTAAGATAGCAATCTTGAATCTACCCATTTGCTGGGTGAAAGACTACAAACAGTACTGCAAAAGCACTGGTGTATTAGTGACTCGTCAACCTGTGGGTAAAATGGGATTACAGCTTGCTAGGCCTTGTGGTGATGATGTGTCGAGCTGaggattcattttaaagaaagatggCAGATTTGtgtcacttttaattaaaaaaacaaaaaacaacaacaacaaaaactcagTGTGAATGATATTTCCGCTCTGCAGGAGTGTTCCCTCTGAAGAAGAGGAATGGACATCTTGCACAGTGGGAATATGAATGGTGCAACAGTGGTGCAAAAACTCCACCAGTTTGGAGGTTTTACATACTGTGTTGTTAATGGCTGTGGGGTCTTTTACATAAATTGAAATGAATTTGTCTAGTAAAACATCTCACATCTTGACAAAACAGGCTGCATATCGCTTTGTTAAGAAGCACCTGGGGGAGAAAACTGGAAACTGTGGCAAAACATCTTTACTCTGCCAATTGCCAAGTAACAATGAGTGCCTGTTCTGTATCATTACACTGTACAGATATATAATCTCTCTAAAAAGCTCTGCATGACAACATAGATTAAACTATATACAAGCTTTACAAGAATGTAACAGCCTCTAGCTAAAACACTGgtcattaataaaaaacacagctgtgagAGAGCTGAAACTGGCTGAGACGACCCAAAACTTAAACGGGAGCGCCGGCTTTCCCCCGTCATGTCTGTGTGACAGGTGTGCTGCACAGAAAGGGCTGCGACTGCATCTTACAGAGAACTGCAGTACAGGGAAGTAAACGGCAAAGGGCAAACTAACAGACTGTCTATTTAGTAACTACAGTCCCATGTAGATAAGAAGACccaattgttttttcattcaaaataactTGCTGAACATCAGGACTGCCTGAGTTTTTACTCAATACCTAACACGGGAtcctgtgtgtttttacatgTGTTAACAGTAGCTAACACGGGATCCTGTGAAACTACACTTTACATGACTGACTGGCAATGGTTTTTGACTGATGTCCAGATGGACTTGTTCATTTGGAAATTAACTGAAGCATTTGGAATGTccaatttgttttacaaatctGATTAAATCCCCCCCCCTTTTGAAATCACACAAATCATAAAAACAGTCCCTAAAAAAACCTCTTACAATAGATATTTCAAATTCATGCAGagatacatattttgtatagttttgtttttgtattactaatTATGACAAAGGTACATGTTAGCTTCCAGGAGaagtttttatttctatatattttgttctataTTTGTGTGAAGTGATCTGTGGCCCAGCGAGTTCAAGCCTCTCACAGCGGTGTGGTGTAAACAACTCTAGCATCCTCTAGTCATTATGGAATTCCCCTTTCCCATTTTCTTTGCATCTTCAATTCGTTTTCTTTTGCATAAGTAAAatagcaaaaaaatatatatccctcGTTCTCCTTATGCATCCCTTAAAATTGGAGCATTAATAGTGGtttcttacaaaaacaaaatcaaataaaaaaaggaagtgATCTCATATATTGTTGGTAGCTGCTTTGTAAACAATCAAATGAATTGGAAAGCTCTCTTTGCCAggattaatttgaatatattctCTAACTGGCATTTGTTTGACAGACACCAAGGGCAAATGCTTGTCACAAAACGCTTATGCTTTACGATTGGGTTGGTATTCAATTAACcgacatgaaaaagtagaacaCAATGGTTCACTTTTCTCCCTGTTTGTCCAGTTAGAGGACTTCCTGTATTTCTGTCCATTCAAGCAAGGCTCTGGGAAGCAGAAGTGCCCCCACCTGTTCACGGTCCTCTGAAATAACGGCCGCAGACACACTTTAATCTTAGTTGGACTGGAACGCAACTCTGTGGGCCAAAGGAGCTCCAATTACCCCCgaattagaaaaatataatacGCATAATGGGCAGAACCATATATTCCCCCAGATTAAAGTGCAGTGGACAACATACAGTAGATGAGACCGGTTCACTTGACATATCTTTTGatagattaaaaagaaaaaaatccaccCAGTATAGTGCTGACAATTAAGAGCCAAGGGAAAGATTGTGGCTAAGGAAAACACTGTCCTTATTCCTGGGAAACAAATGACAATCTCCTCAGTCTTTCCATATCATTTAGCACAGGCTCTATAGAAGAGTCTAGACAACACAAACATGGCTACATTAACAGGCCTCCTTCTTGGTCGGTCAGATGTACAGTCCTTCACTCAAGATTGGGAGTGTTGGGTTCGGTGGAGTGGCAGCAGTGGGGTGCCAGTTAGTGGTTGTGTACGTGTGGTCTGGAGAGAGCAGGATCTTGTCCAAAATGATGCAAACACCTTCTCATTATGCATTCACGAGTAAACAGTGGTCAACTAAGGTGGCTGATGGTAGCAGGATCTTACCAGGGCTGTTGTAAACAGTGACACAACAGCACAATAGCCTTGGAAGaattacaaaaaggaaaacaaaaaagataaaacactgAATTTCGGTGACGTGATATCAGCAGTTCAATGTCACCAATACTGAACAAGGTCACCCAATGACACTTCCACTCATGCTTTCGCGGGGCCTGCGACTGACCACTGGAGGTGTTCATTGTTCGTTCTGCACAGTTTCCTCTCCAGGGCTCAGTCGCATCACATTCCCCTTTTCCTGGTGAAAATGCTTTGCTTCAGCCTCCCGCACTGACGTCTTCTTCAGTTAAAGTTATTATGCATCAGACAAGCAACTCTGTATACTGTCGATCCACAACTGCGCATTATGGCTGTCTTGTGCACAGAAGTTATAGAACCTTTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140836 lncRNA upstream 42094 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA upstream 114713 20650704 ~ 20652823 (+) True G112470
TU140827 lncRNA upstream 128550 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 196109 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 203748 20563498 ~ 20563788 (+) True G112436
TU140931 lncRNA downstream 146461 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 157168 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 249867 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 251213 21024279 ~ 21031984 (+) True G112566
TU140980 lncRNA downstream 283284 21056350 ~ 21056973 (+) True G112573
AMCG00006802 mRNA upstream 475 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 16094 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 74923 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006801 mRNA upstream 93185 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006798 mRNA upstream 120295 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006809 mRNA downstream 135648 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006811 mRNA downstream 164481 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006815 mRNA downstream 315295 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 403482 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 492187 21265253 ~ 21265807 (+) False AMCG00006820
TU139270 other upstream 7724088 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11200185 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12043470 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12590750 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 13112342 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 164431 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 275270 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 369799 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3259047 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3531713 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile