RNA id: TU140970


Basic Information

Item Value
RNA id TU140970
length 540
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G112563
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21017201 ~ 21017740 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctccctctgtcaccttccgccgtaatctccactctgtctccccctccacccttgcctccactgccctcaccctcttaccttccattgagtgtttttcccatctgtctgtcaactgtgctacctcctctttgttctcctccctcacctcctcccttgactctgtctgtcctctcacatctcgtcctgcccgtccctcccctcctcagccttggctctctgctgttctccgctcaacctgaactagtctgcgtgccgctgaacagaaaaggaccaaactcccagctgccctcgaagtctatcgctctctactgtctacattctcctcatcactcacctcagccaagaagtcttacttccaatcactcttcgaatccactgtcaacaacccccgcaaactcttctccaccttctcctccatccttgccccccctccccctcctcctccctcatctctcactgctgatgatttcgcctcctccttctcctccaagattgcagacatccgcaggctgtCTACCCCtcctcccatcacacccaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140969 lncRNA downstream 1153 21015373 ~ 21016048 (-) True G112562
TU140964 lncRNA downstream 19672 20997266 ~ 20997529 (-) True G112557
TU140949 lncRNA downstream 52639 20944169 ~ 20964562 (-) True AMCG00006813
TU140871 lncRNA downstream 260415 20714083 ~ 20756786 (-) True G112496
TU140858 lncRNA downstream 363542 20651041 ~ 20653659 (-) False AMCG00006807
TU140975 lncRNA upstream 6966 21024706 ~ 21031872 (-) True G112568
TU141004 lncRNA upstream 77601 21095341 ~ 21096308 (-) True G112589
TU141146 lncRNA upstream 792625 21810365 ~ 21853012 (-) True G112705
TU141258 lncRNA upstream 1036882 22054622 ~ 22058136 (-) True G112783
TU141271 lncRNA upstream 1130050 22147790 ~ 22148893 (-) False AMCG00006841
AMCG00006813 mRNA downstream 67455 20948876 ~ 20949746 (-) False AMCG00006813
AMCG00006810 mRNA downstream 82986 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006808 mRNA downstream 172981 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006806 mRNA downstream 309243 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006805 mRNA downstream 350256 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006814 mRNA upstream 14658 21032398 ~ 21048481 (-) True AMCG00006814
AMCG00006812 mRNA upstream 37200 21054940 ~ 21088079 (-) True AMCG00006812
AMCG00006816 mRNA upstream 89470 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006817 mRNA upstream 146232 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006819 mRNA upstream 185311 21203051 ~ 21235769 (-) True AMCG00006819
TU140946 other downstream 67365 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 780995 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1381276 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2675991 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3383756 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 2386435 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5482275 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6384860 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7249522 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 7273715 28291455 ~ 28292598 (-) True G113775

Expression Profile