RNA id: TU140971


Basic Information

Item Value
RNA id TU140971
length 347
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G112564
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21022933 ~ 21023279 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTGGACAATTGACAAAAACATCATAAATTATtccagtacatttaaaaaaatctcagatTTAAAGGGGAAGTCGTCATacactttctttcttaaaaaaaaaaccaacagaatatttatttattattttatgatgttGTATGCCTACCTAACTGTACCTAAGGTTGTAATATAGTAAGTCACTTACTTTGTTATCTATTTGAAACTAATTTTACACTGTGGTGTTCAGAATTTGGAGGTGAAGATAACAGTCCTCAGTTAGGTATTGAAGGTGTCTTGTTATTCTTCAATTTGGCatttgtagcgttatgttgggtgtattttgataagagcattttagctctgagN

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140937 lncRNA upstream 88715 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 99428 20919527 ~ 20923505 (+) True G112535
TU140886 lncRNA upstream 249867 20767536 ~ 20773066 (+) True G112510
TU140836 lncRNA upstream 297491 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA upstream 370110 20650704 ~ 20652823 (+) True G112470
TU140973 lncRNA downstream 1000 21024279 ~ 21031984 (+) True G112566
TU140980 lncRNA downstream 33071 21056350 ~ 21056973 (+) True G112573
TU141058 lncRNA downstream 242299 21265578 ~ 21304878 (+) True AMCG00006820
TU141126 lncRNA downstream 594353 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 1028399 22051678 ~ 22058486 (+) True G112754
AMCG00006811 mRNA upstream 77956 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 104523 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 255872 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 271491 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 330320 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006815 mRNA downstream 65082 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 153269 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 241974 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 320363 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 343115 21366394 ~ 21385133 (+) True AMCG00006825
TU140941 other upstream 84763 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 7979485 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11455582 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12298867 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12846147 8175760 ~ 8176786 (+) True G110445
TU140974 other downstream 25057 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 119586 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3008834 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3281500 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3485724 24509003 ~ 24587119 (+) False AMCG00006893

Expression Profile