RNA id: TU140974



Basic Information


Item Value
RNA id TU140974
length 703
RNA type TUCP
GC content 0.59
exon number 1
gene id G112567
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21048336 ~ 21049038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCTGCCGCAAGACTTCACTGACAATCTCCTTGTCGCTGGGCAGCCTGTATCCCGGGAAGATGTAGAGCCAGCAGAGCACAAAGACGCACAGCGCAGCCCACACGGACAGCTTGGGTCGGGGGCATTTCAGAAACATCACCACCATCGTCCCCGCACTCACACAATATCCATGCAAATCACTGGGGCCGCGCAGAAACCCGGGGGGGTCGTCCCCAAACCACTACCTCGTTCCCAGACAGCAGCGCTTCATGCTGTATTTTCCCTGCAAGGAAAGATGGTATAGAAATCTCCGTTGCGCAAAATAAGAGGATCCGCCCCCCTTCTGCGTCTGCTCTGCTCCCCCTTTTCAATCCTCAATCCTCTAAAACTGCTGGATGGTCTCCCAAGTCAGCGTGAAAGTGGCTGTTTTCTGCAGCCGGGTCAGGCTCAGCGCTCTCCCGCCGCATCCCAGACGAGGTTGGCATCCCTTGCCGAAGCGCTGCGGGCTTCTTCTGCGCTCCAGCGTCTGGGCTCCGGGCGCGCAGGATTCATTGCGTTTGGGCAACACACCGCTGTTTATTCCACGTCCCGGGGGCGACGGTTCTTCGTCCTTTTCGGTTTTGTACGATGAAGGGGGTTTGGTGGGATGTGAGCCTGCGGGGAGCGGAGCACAGCCAGCGGCAGCCGCACACAGCCGTCCTCCGAACAAAGCGCCGCTTCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140973 lncRNA upstream 16352 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 25057 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 114118 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 124831 20919527 ~ 20923505 (+) True G112535
TU140886 lncRNA upstream 275270 20767536 ~ 20773066 (+) True G112510
TU140980 lncRNA downstream 7312 21056350 ~ 21056973 (+) True G112573
TU141058 lncRNA downstream 216540 21265578 ~ 21304878 (+) True AMCG00006820
TU141126 lncRNA downstream 568594 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 1002640 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 1010334 22059372 ~ 22059605 (+) True G112755
AMCG00006811 mRNA upstream 103359 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 129926 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 281275 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 296894 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 355723 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006815 mRNA downstream 39323 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 127510 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 216215 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 294604 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 317356 21366394 ~ 21385133 (+) True AMCG00006825
TU140941 other upstream 110166 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8004888 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11480985 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12324270 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12871550 8175760 ~ 8176786 (+) True G110445
TU141018 other downstream 93827 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 2983075 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3255741 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3459965 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4569029 25618067 ~ 25618445 (+) True G113369

Expression Profile