RNA id: TU140980



Basic Information


Item Value
RNA id TU140980
length 313
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G112573
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21056350 ~ 21056973 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGATTCTTGTTTGGATTTTCCATGAAAACGCACTCCTTCATTATGTAGGAGACCACAGCATTTCCGCCCAGCGCTGCGACGTGGTCTCTCGGATGAAGAACATATTAATGATGCCAAGATATTTGATAATTTTTGCGCCGGGGATGAAAGACAGAGGGGTCATTTTGACCACAGCGACAGTGCAGCCTGTGTTTGATGTCGTGGAGCGAAGACGTGAGTGACCTTCGGACACAGGACTGGCTTTCTCAAGTGACGAGGCTAAAAACAggtaagaaataaacacaaaagaccAAATATGTAGTAGACTGCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140973 lncRNA upstream 24366 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 33071 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 122132 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 132845 20919527 ~ 20923505 (+) True G112535
TU140886 lncRNA upstream 283284 20767536 ~ 20773066 (+) True G112510
TU141058 lncRNA downstream 208605 21265578 ~ 21304878 (+) True AMCG00006820
TU141126 lncRNA downstream 560659 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 994705 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 1002399 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 1006731 22063704 ~ 22064035 (+) True G112756
AMCG00006811 mRNA upstream 111373 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 137940 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 289289 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 304908 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 363737 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006815 mRNA downstream 31388 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 119575 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 208280 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 286669 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 309421 21366394 ~ 21385133 (+) True AMCG00006825
TU140974 other upstream 7312 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 118180 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8012902 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11488999 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12332284 8722450 ~ 8724066 (+) True AMCG00006552
TU141018 other downstream 85892 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 2975140 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3247806 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3452030 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4561094 25618067 ~ 25618445 (+) True G113369

Expression Profile