RNA id: TU141004


Basic Information

Item Value
RNA id TU141004
length 413
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G112589
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21095341 ~ 21096308 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGACAAAAACGAATGAGAAATATATCTGGTTACAAACAATAGAAGAAAAAACTCACACATAAATCTTACATCAACTTACACAACTGGCAGAAAGAAGATAATATTAGAATAACAGTAAATACATGTGCATGTTTTTAGCACAAATCATACTGCTTTTTGTTCTGAGTTCCAGTTTTATGATGAAAATAAGAATGTAATTCTATAATGTGGCTGGAAGAAGAAACATTATTGGGTAGAGTTCATTCCAGTACTGGAGGTTATTTCGCTATAGTCACAGCagactttcaaaacatttggTTTCAcTGCCCACCACCAGCAGCATCAAACATCTTCTTCCTTCCCTCCATTCCAGACATAGCCTCCACATTCTTACGCCAGTCCCCAACCTCAGAGGTGAGCACCTTCTCCGAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140975 lncRNA downstream 63469 21024706 ~ 21031872 (-) True G112568
TU140970 lncRNA downstream 77601 21017201 ~ 21017740 (-) True G112563
TU140969 lncRNA downstream 79293 21015373 ~ 21016048 (-) True G112562
TU140964 lncRNA downstream 97812 20997266 ~ 20997529 (-) True G112557
TU140949 lncRNA downstream 130779 20944169 ~ 20964562 (-) True AMCG00006813
TU141146 lncRNA upstream 714057 21810365 ~ 21853012 (-) True G112705
TU141258 lncRNA upstream 958314 22054622 ~ 22058136 (-) True G112783
TU141271 lncRNA upstream 1051482 22147790 ~ 22148893 (-) False AMCG00006841
TU141291 lncRNA upstream 1161241 22257549 ~ 22257974 (-) True G112809
TU141373 lncRNA upstream 1573552 22669860 ~ 22670883 (-) True G112878
AMCG00006812 mRNA downstream 7262 21054940 ~ 21088079 (-) True AMCG00006812
AMCG00006814 mRNA downstream 46860 21032398 ~ 21048481 (-) True AMCG00006814
AMCG00006813 mRNA downstream 145595 20948876 ~ 20949746 (-) False AMCG00006813
AMCG00006810 mRNA downstream 161126 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006808 mRNA downstream 251121 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006816 mRNA upstream 10902 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006817 mRNA upstream 67664 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006819 mRNA upstream 106743 21203051 ~ 21235769 (-) True AMCG00006819
AMCG00006821 mRNA upstream 318012 21414320 ~ 21435187 (-) True AMCG00006821
AMCG00006826 mRNA upstream 463477 21559785 ~ 21593721 (-) True AMCG00006826
TU140946 other downstream 145505 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 859135 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1459416 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2754131 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3461896 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 2307867 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5403707 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6306292 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7170954 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 7195147 28291455 ~ 28292598 (-) True G113775

Expression Profile