RNA id: TU141018



Basic Information


Item Value
RNA id TU141018
length 716
RNA type TUCP
GC content 0.48
exon number 2
gene id G112600
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21142865 ~ 21203201 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttttttttttttttttttttttttttttttttttttttaaagaaaaacagtaatgaCATCACTCCAATGATCACATGGTAGGATATACTTCAATGTGCAGTGACACAGGAGGAGGTTTTATAGGCAGAGCATGAAGTAAGAGAAATGAAAATAGTGGTTAGTACTGTAGAGTCCTATGAGAGTGCAGAGATCAGAGGCAGAGATTCACTTTTTGTCAAACACAAAACTTCACACATGTTCCAAGAAAATGTGTGGAAGCTAAAACTAAGCAAAGTACTAAAGATAGTACGTTTAAAACCTGTAGTACGTTCTTCACCACAAGAAAGGATGAATGTTCGGTGGCACGCAAGGTTTATTTTAGCGTTCCAAAGCCTTTTGTTTCTCAGAAGAAAAAGCTATGAGGAGGCTGTGTTCGTTTTGTTCGCAGGGTCtgtggtgtttgttttcctgtcagTCAGGATACAGCCTGGCTTGCCTTCCTCCTGGCTGGCATCTGCCCAGTCTCGGCCCCggactccctctccctctgagACGCTCCCCCGATGGGCAGGGAGGTCTCTATGGCTACGCCTCCCagtcctcctcatcctcctctgcGGGGGGCTGATGGAGGGCTGGGAGGGGCGGGATCGCATCGGACATCCGGGCGAAGGCGCCGCCGGAGCTGGCCGGGGCCTcggctcctccttctccaccGACGGGGCCCTTTCCGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140980 lncRNA upstream 85892 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 110881 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 119586 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 208647 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 219360 20919527 ~ 20923505 (+) True G112535
TU141058 lncRNA downstream 62377 21265578 ~ 21304878 (+) True AMCG00006820
TU141126 lncRNA downstream 414431 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 848477 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 856171 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 860503 22063704 ~ 22064035 (+) True G112756
AMCG00006815 mRNA upstream 40714 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006811 mRNA upstream 197888 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 224455 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 375804 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 391423 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006820 mRNA downstream 62052 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 140441 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 163193 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006823 mRNA downstream 295832 21499033 ~ 21505375 (+) True AMCG00006823
AMCG00006824 mRNA downstream 322499 21525700 ~ 21554650 (+) True AMCG00006824
TU140974 other upstream 93827 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 204695 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8099417 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11575514 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12418799 8722450 ~ 8724066 (+) True AMCG00006552
TU141703 other downstream 2828912 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3101578 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3305802 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4414866 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 4611854 25815055 ~ 25832942 (+) True G113400

Expression Profile