RNA id: TU141146


Basic Information

Item Value
RNA id TU141146
length 3127
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G112705
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21810365 ~ 21853012 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTTCTATTCACTTTATTTCAGTACGtattactaatacaaaataatctgtACAAAGGCTAAAGTAGGTGTTTTTGCATAGAAGGAACCGTGATGTGAAACATAACTTGGATGGAATGGCACATTAAAGTCTATTAACTAACACACACAAGAAGTTTCCATATCCACCTAAACAATGAGTAACAAGCTCGGTACAAAAATATTCCTGCGCGCACTTCCAATGGTAAAAATACTACAACACAATGCTTCTTTcctattttatttagaaagttatgttttcccccttctttatattcatttattaatttttgtattcctttaaacaccataagaaaaaaaacaaaaacaagcagtcCTCTTGTTTTCTGCACTCCTGatgaaaacacaatgacaaTAACGTTCACATGAGGGCTGGGGCTTTTGAAGAAGATACCGCTCTTTTTTCGTTGCACCCCTTGGCGGAGACAGCCAAAGCCGGGGGCTCAAAGAGTCTCGCCAGTATTCAGTCACAAGCCCACATGTTGTTGCTGGTTATGcatgattaaatacaattaaaaatatattattgaaaagGAAGTcaacaacattaacaacaggaaaatgaaaacaaaataatcgaCAGCATTCATTTCTTCACAACATTACTTGAAAGGCAATGAATGGGTTTTTAACGACAAGCTTTTCATTtgacaaaaaaagaataaagtaTTATACCAACTCTCAGAGATGTTCAGAGTGCATTTCATTTACAAACAACAAACGGGACAAGACTtgtgaaataatacagtatCAGAGTATTCATGGCAACGCCCATCGTAACAGGACCAAGAGCTTGACTTTGTTGTATTGCTAAAGGCTTGCAACACcttgttaaaaataaaggtGGGAGgcattcttgtttttctcctccCTCATCCCCTGCCCCATACAGGATCTAGagcattattgtatttttgctgtttttcagtggcagtATTTACGTAATAAAGTGAGAAATTTTAAGAACatcatttgtgtcttttgttaaatgcataaaaactgCATCTagtgcagatttaaaatatatataaaaaaatgtccctcctttaaacatttgaatagttATACTAcaactggaataaaaaaatacaaaagaaaaaaaaaatgttttcattccttTATTGTCTTTGGCGGTTACATATAACTTGCCTGAGATCAGTCCATCCTGCACaggtatatataaaaaggtaaCCCACATGGACTGTTAAAAGTCTGCTGGTTGCCAACATATTGGTGAAAATCCAATTCCTACCATGACTAGGACTAGAAAACAAAAGCTCTCCTGCTTTCTGGTTACAGATCACAAATACTGCAAGATGCCAATGATGTTGAAGACCTAGTAAGAAAAGACTGATCTGATTTCAGAGTTCAAGGTCAATTTTCTCAAATTACCACAGTCATTAAAAAGACAAGATTATTCCATAGGATTTGCATCACATAATGCTGGTTAACCCAGCTCAGCTTCTTTTAAAaattacactgaaaatacacaaaaatgtgttgGTCATGTAGGGAAGCATATGTGACTCAGCACTGGTTGGTTTTTGTACAGAAATCCTGTACAGTTTAACACTGATCAgcttacaatttacacaatagttcaaaatgtaaggaaaacaacaaaaacaaagcacagttcaccttttaaatgtatttttctttcttggatTACAGCCACTAGCAAAAGTAGTATATTGTAATTGGATCTGCCCTGTGCACACTTCAGCTCATAGGTTTCCCCAAATGCCtgtcatttcaaatgtgtttaagaCAGAAAGGTTGTCAGCTTGAACTCAGAGGTTTCCATAGTGAGGTACTTCTGATTCATGTCACCTCTCCTAATTATTTCCAAGGAACTAATATAAATTGTgacactctctctgtcttcctaGGCAATCAAACAAACCGGAGAGCTGTGTTGAACTGACAGATACTTTTGAGCGTTTACATACACTTTGTACACAATTCAATTTTGGTTCAATCAAGCATGGAGTATTGCTGTAGCAAAAACATGAAAGGATGGGATCCGGTGACAAATACCTGTCAGACTGCACACATGAacaacactgtaaataaaatgcactcCGTCAAAGACACGTTCTTCTGAAGAACATGATTCTAAATCACAGCCTAATAGAGCTTAAAAATCAATCTCTATGTATTTTATCCGCTGAAATACAGTATACGAGGTTTGACAAAGGAAGCTGAAGTATTTAGGACCTGTATGTTAAGATTTTCTACACAGTTAAGGCTGCTTTTGACCATTTTGGGACTGACAAGATGAACGTATATTAGTCACTCCAGGCATAGTAATTTCAAACCTTGAATACAGTAATTGAAGCATTTTAGATTGTTAACAAAATGCACCTTGCAATCTTCAAAACCTCAGATCAGGccatatatagaaatatatcaATGTAACTGCTCTCTCTTCAGTTCAAATGCTTCATATAAATCAGCGAGAGACCGCCCTGCTCTTTCAGCCCAGCATGGTGGCAAAGCTGTAGCGAACTTACACACACCACTTCATATATAACAGTTGTGTTCAAGTGAGGGACAGCATATAATTTTGCGGGGAAAACCAAGTGCTGCCCCTTTGGTTGAGGGGCTGAAATTAAATGGTAGACTTCATTTCCAGACACACGGCAAGTCcaaattgaaacattaaatcAGTCTTATGCTTCACCATTGAGTGGGGGGATGTTTAATTACTTGGAAAATGGCACCTGCCAGGGcgtgaaaaaacaaaagtctgcCGCAACTGTTACGTCTCCTGGGGGCATCAGAGGCAGCTGAGAAAAGCAccatttctaaataaaacctGGATTTTGGCAACAGCTCAGCACTTTCCGAAACTGTCTTCATCGTTATTCAGACGTGAAACGACCGGTGCGTTCTCGAGACGGGACGCAATCCGCTCGCAAAGGCTAAGGTGACAAAACACAGATGTCGGCCCCCTGCAAAGGCGTGATGGTGTCACAGCGTCGGCTCCCCTTGCCGCTAAGTATTGTCATACAAACTTCACCCAAAAGAAGatcatgcatgttttctttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141004 lncRNA downstream 714057 21095341 ~ 21096308 (-) True G112589
TU140975 lncRNA downstream 778493 21024706 ~ 21031872 (-) True G112568
TU140970 lncRNA downstream 792625 21017201 ~ 21017740 (-) True G112563
TU140969 lncRNA downstream 794317 21015373 ~ 21016048 (-) True G112562
TU140964 lncRNA downstream 812836 20997266 ~ 20997529 (-) True G112557
TU141258 lncRNA upstream 201610 22054622 ~ 22058136 (-) True G112783
TU141271 lncRNA upstream 294778 22147790 ~ 22148893 (-) False AMCG00006841
TU141291 lncRNA upstream 404537 22257549 ~ 22257974 (-) True G112809
TU141373 lncRNA upstream 816848 22669860 ~ 22670883 (-) True G112878
TU141401 lncRNA upstream 913261 22766273 ~ 22772685 (-) True G112903
AMCG00006826 mRNA downstream 216644 21559785 ~ 21593721 (-) True AMCG00006826
AMCG00006821 mRNA downstream 375178 21414320 ~ 21435187 (-) True AMCG00006821
AMCG00006819 mRNA downstream 574596 21203051 ~ 21235769 (-) True AMCG00006819
AMCG00006817 mRNA downstream 637516 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006816 mRNA downstream 680691 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006832 mRNA upstream 13875 21866887 ~ 21877250 (-) True AMCG00006832
AMCG00006837 mRNA upstream 166880 22019892 ~ 22049178 (-) True AMCG00006837
AMCG00006838 mRNA upstream 205232 22058244 ~ 22128302 (-) True AMCG00006838
AMCG00006841 mRNA upstream 277483 22130495 ~ 22197664 (-) True AMCG00006841
AMCG00006839 mRNA upstream 346954 22199966 ~ 22202511 (-) True AMCG00006839
TU140946 other downstream 860529 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 1574159 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 2174440 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 3469155 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 4176920 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 1551163 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 4647003 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 5549588 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 6414250 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 6438443 28291455 ~ 28292598 (-) True G113775

Expression Profile