RNA id: TU141219


Basic Information

Item Value
RNA id TU141219
length 234
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G112755
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22059372 ~ 22059605 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTATACCCCTCTGCTGGAGTACAGGCCTTCGTTCTGGTGGCTCAGATCGGGCCGCCCCTGCTCCCCAGACTGAAGATAACCCGATCCGAGGCCCTGCCTGGAGAGGGACACACAACGCACAACAGTCCTCAGGTCACCAGCCATCCCAATTAAGTCACTCTTAATTTTAGATATGTCAAATAAGCtttcaataattgttttaaaatcattctTGTGTCCATGCCATCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141218 lncRNA upstream 886 22051678 ~ 22058486 (+) True G112754
TU141126 lncRNA upstream 438961 21617632 ~ 21620411 (+) True AMCG00006829
TU141058 lncRNA upstream 754494 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 1002399 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 1027388 21024279 ~ 21031984 (+) True G112566
TU141220 lncRNA downstream 4099 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 5990 22065595 ~ 22065804 (+) True G112757
TU141222 lncRNA downstream 8616 22068221 ~ 22068423 (+) True G112758
TU141232 lncRNA downstream 77880 22137485 ~ 22211792 (+) True G112762
TU141281 lncRNA downstream 197945 22257550 ~ 22258386 (+) True G112802
AMCG00006835 mRNA upstream 45541 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 59646 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 65044 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 191136 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 206355 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006843 mRNA downstream 295975 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 340489 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 593259 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 629579 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 695083 22754688 ~ 22772629 (+) True AMCG00006850
TU141018 other upstream 856171 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1010334 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1121202 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9015924 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12492021 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1972508 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2245174 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2449398 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3558462 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3755450 25815055 ~ 25832942 (+) True G113400

Expression Profile