RNA id: TU141222


Basic Information

Item Value
RNA id TU141222
length 203
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G112758
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22068221 ~ 22068423 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCTCTGCGCCGCGCTCCCCTTGAAACCTTGGACGAGGTTTTGGACTTGGGGCTGGGCACGTCGCCATTCTCTGATGGAGTCATTTCCTTCACCTGGACTGGGTGTGCTGACGGCTCCTGGATCACCAGGATGTTGTCTTTGCTGTGCTGCCCCAGGTGGAGCTTCGCAAAATCAAAGCCTTTGACACTGGGAGCCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141221 lncRNA upstream 2417 22065595 ~ 22065804 (+) True G112757
TU141220 lncRNA upstream 4186 22063704 ~ 22064035 (+) True G112756
TU141219 lncRNA upstream 8616 22059372 ~ 22059605 (+) True G112755
TU141218 lncRNA upstream 9735 22051678 ~ 22058486 (+) True G112754
TU141126 lncRNA upstream 447810 21617632 ~ 21620411 (+) True AMCG00006829
TU141232 lncRNA downstream 69062 22137485 ~ 22211792 (+) True G112762
TU141281 lncRNA downstream 189127 22257550 ~ 22258386 (+) True G112802
TU141288 lncRNA downstream 226265 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA downstream 226265 22294688 ~ 22300929 (+) True G112807
TU141317 lncRNA downstream 387339 22455762 ~ 22455964 (+) True G112832
AMCG00006835 mRNA upstream 54390 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 68495 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 73893 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 199985 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 215204 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006843 mRNA downstream 287157 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 331671 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 584441 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 620761 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 686265 22754688 ~ 22772629 (+) True AMCG00006850
TU141018 other upstream 865020 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1019183 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1130051 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9024773 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12500870 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1963690 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2236356 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2440580 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3549644 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3746632 25815055 ~ 25832942 (+) True G113400