RNA id: TU141232


Basic Information

Item Value
RNA id TU141232
length 4108
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G112762
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22137485 ~ 22211792 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatagatttaaaccttatttatgtattcatttttttgaatttttttttgcttcagtaTAAAAATATGATCCGACTAAATTACAgcacattcataaaaatatgatGTAGTGCATAACCAAAGTTTATCCAAAATGTATTAGTACTatctaaaaacaattaaagcgttacaaaataaaaaaaaaataataataattctcagTAGTACCTTATACAACTCTGCTAAAAAGGCTGGGagcttaattattaattatataaatacagcttCAGAAATGCTGTTGCATGCTATACTGCCATACATAGCAAGTGCAGTGGTACTGATTAAAACCAACCATGAGGTTGAATACCATAGACGGTCTTTAGTGAACAAACGATTCACACAATACAGGGAATAATCTTGTTAAAAATATAGTTATTGCTAAGCAGGTCGGTCTCTAAGTTCCACAACTTTGAGGAACCTAccacaaaaacatttgacaaaagTCATGACACCAACAAGCAGTAACTGGATTAATCTGTTTTGCATCTGCTTACACATGAAACAACATGGCATGTTAACTGTTGGCTTCCACAAGGGCCTCAAAGTGACAATTCCAAAGAGCTGATAGGTGACATAATGGCAGTTTTACAAAAAGCATTCCTCAACCACAATACAGTCACACAGGTTATCTGTTACTATGGAGATCCCTACTCCCGGCCCTGTAGAGCTACAGTCTCTGCCGGGTTTTGTTCCACCTGAACACTCTCTCATTTAAGTCAATATTGTCTGATTAAAACCCACTGAACTACCTCTTTCTAGTTCCGAGACTATGGACAGAATTGGGGACCTCCTGCATTAGTACATATTGGTGTGGTTATGAAAAAGCTGTCTGGTACACAATCTAAACAAGCTCACTTCCTATTTTAAGGCAAATACGTTAGACCTTGATTTAAAAGCACAGCCACATTTTCCAGAGATTTCTGTACACAAGTATAGCACTACTCTTTACCacattgtttgtctgtttgtagaatgaaaaaaaatctcataCTGCAATTCAAACCACACTACTGAAATACGATCAGGGTCATAcaatcagaaaaatataaacgcaGAGGGGGCATGTTGTTTTGGAAGAAGCATTCTGAAATTGACTTAAATTTACACAAATACAGCAGAGGGCGACAAATGACAGCAggtgaaacaaaaagaaaagcaaaaaaccTACCAGAGAGGAAAGCAAGGAAACAGCAGCATATTTGCATTCTAAGATGAAGGAGTTTTATACGAGGGGGGAAGGGGAATGTATGCAAACCTACTCAGAAATACTAATTAGGTCACGACAAGTACTTACCAAGTAACTGGGTGTATGTTGAGGAGGATTTACATGAAACATAGACCTTATGTGGTAGAATAAGTGTTCCAGTGTTCTCTGGAAATGTGTTCTTGGCTGTGAAAGTAACTAATGTAGCTTTGATTATTAGTTCTCAGAGATCACATTAAGAACtcactttcatttttcaaaGGCATTTGGAGTCAGGCATCAAATTGCCAGACTCCTTAATTTGAAAACGTATACTTTGAGCTctagtgtgtcacagtgtgaaACTATTATTTGTTGATTGATAATTATGGTGATAGGCTCCACTTTGTTCCATAAAATTCAAAGAAGCTGACAATTAAAGacaataagtattaaaatatgcaCCAGTCGATTGAGTCCAATTGGGAAAACTGGTAATAGTCCAATACCACTTGGATTCTAATTGCTGAAGGCAATTCTTTCTATTCTAATAGCGAGAAAAAGTTtgatgtgggaaaaaaaaaacgaacaaaaaaacaacaacatgcatcCATTTTCATTAGTAGAAACGAATCTCctaaaacaaagaagaaagaaaagcatgcAAGCATTATGTTAACAAGCGAAACTTCATCCTGCATTCTTTACCCACACAGTAGAGGGTAAAAGGCAGATACTAAGGACACAGACTTGTACAATGCAGTAAATCGTCTTTCTATGAGCACTAGTGgtgattaaaaagaaataacttTTCCCAGTTCAGGCTTATTGGTGGGTAATAAAGTACTTACTatacatatttgcaaaaaaaaaaaaaaaaaaattccccccCACTAAACATGGACTTTAGCCactaagtgtttttgttttttctcagtaGACAAATCATCTCTGGGCTGACAGTATCCAATAAGTAATGTACTTATGCTTAGCACTGCCTTTGCAGACAATCACAAGTATGCCCAATAGTCACCAATTATATTCTCATATCCcaatagaaataaaacattaaaatgcaagattaaatatgaaaaataattacatttaaccaAGGCAATTGGCTAATAGGGCATACATTTTACCTGCATCAGTCGTCTCTTGTATAACAGGATTAAGTCTTTATGTTGCAACATCTTTGACTAAAGTGTTTGTTAATTGAAAACTCCAACCTTTCAGCCAATAGGATTTCCAAAGATGTCACTAAATGGACACTTGTTTTGTCCCCCCTGTGGAAACGTTGCATCAAGTGTTGGGCTTGGAATTAGCAATTGGCAGGTGGATTGAATTTGTGACTTAATCCTAGTGAGAACTGCCTGAAGTACCCTATTCAACATGTGAACTTGACGTGTTTGTTTACTGCTACCACTATTCATTTCCCCCCCGTTTCACAATGAGACATTCTGAATCTTACCGCCCAAGCCAAAGTGGGAAACAAATACACTGCAGAGGATATAAAtgaacatttagttttttctacaAACAAAGAACAATTTTTTTTGACAgtcaaattattttagaaatacaaattatgcaaatcaagTGAATAATCAGTGATAGCCAAAAGTTTCCACCTGTCTTTTCCAACAGTTCTCAACAGTCAAAGGTTCAACATGCTGCAGtatgtgtgattattttatgGATCTGTTTAAAGGCAGAAGGCAGATTTTGGCAGCTAGAGATCAACGTTTTTCAAAGGAAGATGTAGTGGAGAAAACTATTGTGTCAACCTTTTTTAATACGTCACATTGTGTGGGAAAGTCTCTCTAGGTAGTCCACAACTGTatataaaaccacaattaacaTGCACAAATTACTTTTAGTGCCAAGCAATTCTGCCTTCAAAAATCGGCAGAATTATTTGTTCATATGCACACATTTTTGTTACGTGtctgaaatgcactgaaatgtcTGAAACTTGATCTCGTTTGGGACATGCATAGCCTGTTTGATTCCATTGATTATTTTAAGTGAGGAAGTTAAATTTTACTTCAGGAATAGGTGATGAAAGCAGAGCACCACAAAAACACTCTTGATGTATTTCTGAAACAATGAATGTTTACATCCATATTTGCATTATAGCTTTAGAATAACCTGCTGGGATAGCTGGTATGCATCCCAAGTGGCATTTTCAACTGGAACGAAGCTCTTTTCCTTGCAGTTACATTTGTCGTGAGAGGTTTGTGGAAGTCCAAATCATTTGGCAATGTGCTGATCGTGTTTCAGGGTGTTCTACCCTACAGAATGTGCAACATCCAAATGAGTCTCCAGGTCTGGAACAATGAAGCATTCAAAACTACAGAAAATGTGggagttgtgtttttgtgtggtttttaaataaatgtatgttaaaacGGAGGTACATCAGGTAGCTTGTCAGAACAGGAAACCTTTCCCAGAAACAGTCAACACACAAGTCAATGGAGGGGCTAGTGTTGCAGGTACCCCTAGAGACTGGGGACTCGACTGTTTGTGGCTCATCTTTGTTTCTTGCTGCTAAACATGGAAGAATATTGCTGGAGGCGAGTGTTCAATACATGTCCCTATAGATCTCCTGCAGCAGCGGGTGGAGGGAGGTGTCCTCTGTCTTCTTGATCTCCTGAACGAGCTGTGCATGCTCGGTGACCAGCTGCCGGAGGTCGGCCAGTTTCTGGAGCAGTTTGGGAAAAAGGAAGATGTCGTCGGGGTGGTTGGCTTGGAGGTGCAGGCTGAGGACCTGCACAATGCGCTCCTGCATCTTCTCGATGTGGCCCACGTTCACCAGGCCAGGGC

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141222 lncRNA upstream 69062 22068221 ~ 22068423 (+) True G112758
TU141221 lncRNA upstream 71681 22065595 ~ 22065804 (+) True G112757
TU141220 lncRNA upstream 73450 22063704 ~ 22064035 (+) True G112756
TU141219 lncRNA upstream 77880 22059372 ~ 22059605 (+) True G112755
TU141218 lncRNA upstream 78999 22051678 ~ 22058486 (+) True G112754
TU141281 lncRNA downstream 45758 22257550 ~ 22258386 (+) True G112802
TU141288 lncRNA downstream 82896 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA downstream 82896 22294688 ~ 22300929 (+) True G112807
TU141317 lncRNA downstream 243970 22455762 ~ 22455964 (+) True G112832
TU141360 lncRNA downstream 471168 22682960 ~ 22683187 (+) True G112868
AMCG00006835 mRNA upstream 123654 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 137759 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 143157 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 269249 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 284468 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006843 mRNA downstream 143788 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 188302 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 441072 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 477392 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 542896 22754688 ~ 22772629 (+) True AMCG00006850
TU141018 other upstream 934284 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1088447 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1199315 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9094037 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12570134 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1820321 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2092987 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2297211 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3406275 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3603263 25815055 ~ 25832942 (+) True G113400

Expression Profile