RNA id: TU141281


Basic Information

Item Value
RNA id TU141281
length 837
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G112802
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22257550 ~ 22258386 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTctttattatgcatttcttttgtGCAAACATACAAGTTCACAAAAAAGCAATTCTAAAAGATGACCAACACTGTTACCAGGACAACATAATTGTCTGGCCATAAGCTGAACTCTCTTGCAAAGAGGACAAAATTACCAGCCTATTATTCACATCTCTCTACTTACTGGCTACTGGGATTCCAGAAATTAGATCATTCAAACTCAGatattgaaagaaaagaaaagccaccAACCTCAGGGATGTTTCTGGTTTCGAGtgcactgtattaaaaaaaagccaGGAGTAACTCCCTcatattttggtttctttggGCTCCAGCTGAAGGACTTGAGGACCCCTGCGACTTGTTTCTAGCGTTGTATTGCTGCCCTTCAGGGAAGGCAGTAGGTTGTATAGTTATCTGCTGATGGGGCAAAATCACTACCCTGAAACCACACAACCTACTACCTCACCCTGTGCGAACACCAGCGAGTGCAGTCTCAAAGGCCCGTGAAAGTTACCCTACACGAGGCAGATTCCAAATGACACAGGGTGAACAGatgaaacattttctgtgtctgtttgtcctTTCCAAGAAAACTGGTCCAGAATCCCCCTGTTTCTTCAAAGAGATTGTGTATCTTTTCTGCAAGGATGTTACATTcaccagaaaaaaatgaagcaaGCAAAGCCAACAAtaccaaagaaaaatacaaataacataagCATACTCCTTGTCCCAACCTCCCCCTTCTCCACACTCCCGTCACCCTTGAACCCAATCAACACTTTGTGCAGTTTAAATCGACATAATGAAAATACACTCAGAAGTCTGTATGGTGAGATCTCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141232 lncRNA upstream 45758 22137485 ~ 22211792 (+) True G112762
TU141222 lncRNA upstream 189127 22068221 ~ 22068423 (+) True G112758
TU141221 lncRNA upstream 191746 22065595 ~ 22065804 (+) True G112757
TU141220 lncRNA upstream 193515 22063704 ~ 22064035 (+) True G112756
TU141219 lncRNA upstream 197945 22059372 ~ 22059605 (+) True G112755
TU141288 lncRNA downstream 36302 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA downstream 36302 22294688 ~ 22300929 (+) True G112807
TU141317 lncRNA downstream 197376 22455762 ~ 22455964 (+) True G112832
TU141360 lncRNA downstream 424574 22682960 ~ 22683187 (+) True G112868
TU141460 lncRNA downstream 605599 22863985 ~ 22864508 (+) True G112938
AMCG00006835 mRNA upstream 243719 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 257824 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 263222 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 389314 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 404533 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006843 mRNA downstream 97194 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 141708 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 394478 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 430798 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 496302 22754688 ~ 22772629 (+) True AMCG00006850
TU141018 other upstream 1054349 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1208512 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1319380 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9214102 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12690199 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1773727 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2046393 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2250617 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3359681 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3556669 25815055 ~ 25832942 (+) True G113400

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047319 True 94 miRNA 0.49 1 NC_007136.7 2192682 ~ 2192775 (+)
grasscarp (Ctenopharyngodon idella) TU125809 True 3393 lncRNA 0.38 3 CI01000020 754453 ~ 788626 (+)
grasscarp (Ctenopharyngodon idella) TU244651 True 234 lncRNA 0.28 1 CI01000050 5909722 ~ 5909955 (+)
rainbow trout (Oncorhynchus mykiss) TU1480622 False 480 lncRNA 0.43 1 NC_048579.1 45518206 ~ 45518685 (-)
eurasian perch (Perca fluviatilis) TU117844 True 4748 lncRNA 0.41 5 NC_053119.1 23198588 ~ 23224641 (-)
tiger barb (Puntius tetrazona) TU244651 False 1237 lncRNA 0.34 3 NC_056723.1 1778165 ~ 1780225 (+)