RNA id: TU141289


Basic Information

Item Value
RNA id TU141289
length 2464
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G112807
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22294688 ~ 22311460 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTAACACTTACTATGTGCAGGAATACATATTCTCAAGGAATACATGCAGTACAGCAATGAagagagcagagagagaccAATGGTGGGGACtgcatggaaaacaaaaggacCAGTCACAGGGGCTACCAGGTGGTCTTCCTCAAGTTGCACGTGTCTAAACAACTTCTCTATTTCACCCGGGACCTCCGAGGGCACTCCCTATTGAGAGGGGAACAAAGGCCATGACCCCGAGGTCAAAAGTGTTACACAGGGAGCAAGCCGGCCCCATTGACAGACACTGCACTGTTTGCTTTGAGTAGGTAAAGATTACTAATACATTAACTAATACGGATTAAGGGGTTATCCCCCTAGGGATGTCACTCAGAGTGTTGTACATCACTTCTTATTAACATCTGTGACCTCTCAGTTTTTCCTTCAAAGTGCAAGCACAACTATAATGTCATGCAGAAACTGAGGGgaatataagtatatattgatagatagataaatagatagatagataatgtCAGcgggataaaaaataaagacaaaatgttcatGTGTTTTATATGCTTAGATGGACACACAAGTTACatgcaaatgtattagaaaACCCTAATTCTTCTGCGGTTTCTTAGGTGTTGAATCATATGAACCTTTTTAACTGAATATCCCAGGAAGCAGGATGCTTTTAAACTAGGCAAATGGTTCATTGTTTAATATTACTAATCAGTTGAATATGATACACTTGCTTCAATTCATAATAAACGGAATAACAAAAGGAACAGGTGACCACTAAAAGTACTTCACCTTCACAAAAAAGATGACTCTGTGGATAAGCAGCTTGTGCTGCTATTGTGTTCTTTCAACTGGGATTCGGTCGACTGGAGTGGGTACTATATGAAGCTCAAAACTGTGTTTATCAATTTCAATATAAGtagacattaaaaatatatattcctatgAGTAATTGCTTCATATGCTAAATGTCTACAAAGAACAAATCCAGAGGTGTTTGGGTAAATTAGCACATTTCTggacaaaatcacacacaccaaaaaaaataatataaaaaataaaaaataaatatatatatatatatatatatatatattcgggaatatatatttcttcccaCATACACTACATAACTTGCAtgccttatttttaaaatgcttttgtaagTGTAAAGGTATCctaaatttgcattttatatatgaaGAGGAGGTGTGAGGAGTATACAGAATTGATGGTTGATAAATACGAAGCTATcttgaaatgcacatttgtgtAATGGCTGAAAGCAATTATATCTAATTCAGGtgacatttattgtatttgcgGAGAAGCTTGCTTTCCCACACAGGTAATGTGGCCATGTAACACCAGGGAAAAATGTACAGGTCTGTTTTCTTTATGCAGCATATTAATAAAGCTACCTTACCATCAAGTAAAATGGGGTTGTATATGATTCAGAGTCCGAATCACAAAATGGAGGATGAGGAAGAGCAGCCAGACCTGCAGTATTTAAGACTGAGCCAcgaattataaaaaaaacaagagtgCACAATAGTTCACTGTAGGAAAAAGGAAGGGCTTTTGttagtattataattaatgggtttacatttcaaatataaattgttCTGATGCTTTTACAGACATTTGGTGATGGGGGTCACAAAAAGTATaagagtttttaaaatgtattttgcagtagttatacaattaattttaattaagtttcaAATTTGTTCTAACTAATTTACAATCAGCATACATAATGTCCATTACAAAAAGATCACTTAAGTGTAAAACCATGTAATTATTAACTTCAGAttatttactaaatatttgtttatgataACTGTAGATACTACTGGGATACCTTAggtgtgaaaaatatttaatgttttgtataaatatatcccaatccagaaataatatataaatgtacatataagTGTATAATAATATGGTTgcctaatgtatttattttttaaataagatttgaCTTGTAATTCTGTAATTCATAAACAGTTCTttacatattgtacatattgtaaTTTTCAATGAGGGTGCTAATTTCTTATGCgagagaaataaaaatctgaatgtGGTGTCACCCttcatataaaattaaatgtacccGCATATTTTCTGAAGCTAGAACTATACCTTGCTTTCACAacacatttcttcatttttgaaataaatatttttgaaactTATCAAATAGTGTGCCTGTTTTATAAAAGAGTGTTGCTTTCCCTAATAATTCCCTATATTTATTAGTTTCTGGTTGTTTATTAgtaaataaagatttttttttttcttcacatatatatgtatttaacttttttctttctttttctttatttattgaagaGAATAATACCAAGAGTACCGAATAATGTAAGcagacacaaaatgcttttcttaaGGCATTTCTTGGCAAAATTAACATTACATAGCTTTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141281 lncRNA upstream 36302 22257550 ~ 22258386 (+) True G112802
TU141232 lncRNA upstream 82896 22137485 ~ 22211792 (+) True G112762
TU141222 lncRNA upstream 226265 22068221 ~ 22068423 (+) True G112758
TU141221 lncRNA upstream 228884 22065595 ~ 22065804 (+) True G112757
TU141220 lncRNA upstream 230653 22063704 ~ 22064035 (+) True G112756
TU141317 lncRNA downstream 154833 22455762 ~ 22455964 (+) True G112832
TU141360 lncRNA downstream 382031 22682960 ~ 22683187 (+) True G112868
TU141460 lncRNA downstream 563056 22863985 ~ 22864508 (+) True G112938
TU141465 lncRNA downstream 576460 22877389 ~ 22881356 (+) True G112940
TU141481 lncRNA downstream 652251 22953180 ~ 22956200 (+) True G112954
AMCG00006835 mRNA upstream 280857 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 294962 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 300360 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 426452 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 441671 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006843 mRNA downstream 54651 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 99165 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 351935 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 388255 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 453759 22754688 ~ 22772629 (+) True AMCG00006850
TU141018 other upstream 1091487 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1245650 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1356518 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9251240 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12727337 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1731184 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2003850 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2208074 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3317138 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3514126 25815055 ~ 25832942 (+) True G113400

Expression Profile